SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24142

Length: 2317 nt

UniGene Fasta

>sp_v3.0_unigene24142
ACCCTCAGCCTTCCGCTTCTCCCTATTTCTCGCACGCCTCTTTTAACAGGTCTACGACTTGATTCCCGCCGCGTTTATTAAAGCTCGGCCGCCGAGTTTCCAAATATCCAGCCCCCGAGGGTTTCAAAATCTGCGAACCAAGACCACGGTTTTGGTTGATTTTTGCACACAAAAGGAGGTTTCCATATCGATGCCGTATTTAAAGGCGTTCCCGATCGTTTGATTGTGAGAAGGATGCAGATTTTGTGTTAATTATCTTCTGAGATCGGCCTCTGATATTTAGCCCGAACTCCTTATGCGGGGTGCTCATCTGGCCTTAAATCGTTCGGTTTAGCCCGAACTTTGTAGGCTTGAAAAAGATGTTTTAATCGGGGAAGTATTTGGAGGTCATCGGGGCTTAAATATTGGAGCTGTTCAGCATTCTTGAGAAATTTGCTTTTGCAGGGACGAATCTTCTGTTTTCATTGTGGAGATTTCTGATCTGGTATTTGCCTCTTCTGCTGTTTGGCTGTGGTCTTATTTATAAAGTTTCGAATTCTTGAAGCTTTGCCGGGCTGAAATCCCGCTGTTTAGCCCGAACTTTGAATTATTGAGAGAAATTGTTTGCATCGGGCGAAGTTTGCGGATCTTATCGGGCTTAAATACTGAAGCCGTTTTGCAGTCCTGAAAATATCGCATTTGTAAGGGTGAATTTTCTGTTTTCTTCGGTGCTTAGGGGTTTAATAGTGTTCTTCAAAAAATATTTAAATCGGCAAACTTTTTGTTATTTGGCTCAAGTATCGAAGCCATATTGTTGGTCCGCCATTTTGTATGCCTGAAAAGTTCGCTTTGGAGGGACACGTTTTCAGTTCATTCCAGTTCTTAGCTTTTGCTATGCTGAAAGCATAGGGTTAGGGTTTCAAATCGTTAAGCGTGAGTAATACTGAAAAACATAGTAGATCTAAATCTACTGTGTTAGATTTTTTCTGTTTGGTCTTTAGGTCGGTCACCTAAGCTGTATTTTTGAGATTTGCAGGAAAACAATCTGTAAATCTCTCTGTTTTAAACCTTTGGGCTTGTAGCTGGTTGTCTGTTCCCTAAAATGCTCAGGCAGCAAGCGAGAAATGCCTGGCATGACGTTGAAAACGTCACGAAAGTCAAGTCTACAGTCAAAGAAGTGAAATTTCGAGGTGTTCGCAAGCGTCCATGGGGAAGATTTGCTGCGGAGATTAGAGATCCGGTGAAAAAGGCAAGAGTTTGGCTCGGTACATTTGATACGGCTGAAGAAGCGGCTCGTGCTTACGATGAAGCTGCTAGAGCTCTGAGAGGAGCCAAGGCAAAGACAAATTTCGCCGTTCCCTGCGACGATCAGAGTACAAGCCATAGCAGCACCGTGGAGTCTTCGAGCGGTCCAAGAAATCAGGACGACTCGAAGAAAGCTTTCAATTTGAACGGCAGGGGAACAAGGTTGGTCGAAATTAGCACTAGAACTCATCGGAATAGAGGGGCTAAAGACGCTTCGCGGACTGGCAACGATATCTATAAGAAATACAGGCGAAGCAGGGTTTCTGAAGTGCGGGATTGGCCAAACGATCCTGTACAGCAGTTCGGGTTCGATGCCGCTCCTTGCCACAGCGACTGCGATTCGTCGTCGTCTGTAGTAGTGGACAATGATGCTAATTCTGGCGAAGATTTCCCGTGTGATGTGAAACCCTTGCAGGAAAGTGGTTTTGATCTGAATCTTTACAAGGAATGGAGAAGCCCGGAGCGGCAGGATCGGAAAATGTTGCCAGATTTGAATCTTCCTCCCTGTGAAGATGATGCGGAAGATTACCGGGATTTTCTGGCCATATCGTTGCGGATCTGATGAGAACAGACGGCAATATTCTTGATTTCGTCTCCTCCGTCCGACGGGAGTTTGTTTGTGATCGCAAACGCTAATTACAGTCAATTTGCCGTGCTCAAAGGTGTGATCTGTTTTTCTTACAATTAATCCTTCTGAGTATTCGACGGATCCTATTGGTATGTAGGTCTGTTCTCAAGAAATTTTCTTTTATCTAAAAAAATAGTGAAAATATCTAGAATTACCACAATGGTCATCTTATTTTTGTGACTCTGGATTGCGAGTTGCTCTTTGAAATATACATTTGAGACCGGCGAGGCCAAATGGTCCCTAGTTATTTATTCGGGTCATCCTTTTTGGCTATAATACATAGTAGATTGTACAGAGAAGATTGTAATGGATTATGTTATTAGCAGTTTATGGTCAATTAGATTTGATTAATGGCCATTCTGATTTAATGAAACAGATTATGAAGTTTGACTCTAGCTATTTTTT

Ace file of the UniGene sp_v3.0_unigene24142

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene response factor 1 n=1 Tax=Cucumis sativus RepID=Q5S004_CUCSA	-	-	4.0e-14	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	AP2/ERF domain-containing transcription factor	-	-	0.0	-

Source	Gene names
Sma3	24.t00032; 8F2.12; ATF2; At1g03800; At1g12980; At1g24590; At1g28360; At1g28370; At1g50640; At1g53170; At1g72360; At1g80580; At3g14230; At3g15210; At3g20310; At3g61630; At4g34410; At5g13910; At5g44210; B1103G11.12; BIERF2; CRF6; DRN; DRNL; ERE; EREB2; EREB

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nuclear body	GO:0016604	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	cytokinin mediated signaling pathway	GO:0009736	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	gibberellic acid mediated signaling pathway	GO:0009740	Biological Process	-
Sma3	induced systemic resistance, jasmonic acid mediated signaling pathway	GO:0009864	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	embryonic pattern specification	GO:0009880	Biological Process	-
Sma3	positive regulation of seed germination	GO:0010030	Biological Process	-
Sma3	specification of organ axis polarity	GO:0010084	Biological Process	-
Sma3	negative regulation of ethylene mediated signaling pathway	GO:0010105	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	transcription factor import into nucleus	GO:0042991	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	cotyledon development	GO:0048825	Biological Process	-
Sma3	regulation of cell cycle	GO:0051726	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3		IPR004348	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G20310.1	ATERF-7, ATERF7, ERF7 ethylene response factor 7 chr3:7085957-7086691 REVERSE LENGTH=244	5.0e-16	80%
RefSeq	Arabidopsis thaliana	NP_188666.1	ethylene-responsive transcription factor 7 [Arabidopsis thaliana]	7.0e-16	80%
RefSeq	Populus trichocarpa	XP_002329833.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	5.0e-16	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9F4

Fln msg: your sequence is longer than subject: 255 - 189

Fln protein: MLRQQARNAWHDVENVTKVKSTVKEVKFRGVRKRPWGRFAAEIRDPVKKARVWLGTFDTAEEAARAYDEAARALRGAKAKTNFAVPCDDQSTSHSSTVESSSGPRNQDDSKKAFNLNGRGTRLVEISTRTHRNRGAKDASRTGNDIYKKYRRSRVSEVRDWPNDPVQQFGFDAAPCHSDCDSSSSVVVDNDANSGEDFPCDVKPLQESGFDLNLYKEWRSPERQDRKMLPDLNLPPCEDDAEDYRDFLAISLRI*

Protein Length: 256

Fln nts: ACCCTCAGCCTTCCGCTTCTCCCTATTTCTCGCACGCCTCTTTTAACAGGTCTACGACTTGATTCCCGCCGCGTTTATTAAAGCTCGGCCGCCGAGTTTCCAAATATCCAGCCCCCGAGGGTTTCAAAATCTGCGAACCAAGACCACGGTTTTGGTTGATTTTTGCACACAAAAGGAGGTTTCCATATCGATGCCGTATTTAAAGGCGTTCCCGATCGTTTGATTGTGAGAAGGATGCAGATTTTGTGTTAATTATCTTCTGAGATCGGCCTCTGATATTTAGCCCGAACTCCTTATGCGGGGTGCTCATCTGGCCTTAAATCGTTCGGTTTAGCCCGAACTTTGTAGGCTTGAAAAAGATGTTTTAATCGGGGAAGTATTTGGAGGTCATCGGGGCTTAAATATTGGAGCTGTTCAGCATTCTTGAGAAATTTGCTTTTGCAGGGACGAATCTTCTGTTTTCATTGTGGAGATTTCTGATCTGGTATTTGCCTCTTCTGCTGTTTGGCTGTGGTCTTATTTATAAAGTTTCGAATTCTTGAAGCTTTGCCGGGCTGAAATCCCGCTGTTTAGCCCGAACTTTGAATTATTGAGAGAAATTGTTTGCATCGGGCGAAGTTTGCGGATCTTATCGGGCTTAAATACTGAAGCCGTTTTGCAGTCCTGAAAATATCGCATTTGTAAGGGTGAATTTTCTGTTTTCTTCGGTGCTTAGGGGTTTAATAGTGTTCTTCAAAAAATATTTAAATCGGCAAACTTTTTGTTATTTGGCTCAAGTATCGAAGCCATATTGTTGGTCCGCCATTTTGTATGCCTGAAAAGTTCGCTTTGGAGGGACACGTTTTCAGTTCATTCCAGTTCTTAGCTTTTGCTATGCTGAAAGCATAGGGTTAGGGTTTCAAATCGTTAAGCGTGAGTAATACTGAAAAACATAGTAGATCTAAATCTACTGTGTTAGATTTTTTCTGTTTGGTCTTTAGGTCGGTCACCTAAGCTGTATTTTTGAGATTTGCAGGAAAACAATCTGTAAATCTCTCTGTTTTAAACCTTTGGGCTTGTAGCTGGTTGTCTGTTCCCTAAA_-_ATGCTCAGGCAGCAAGCGAGAAATGCCTGGCATGACGTTGAAAACGTCACGAAAGTCAAGTCTACAGTCAAAGAAGTGAAATTTCGAGGTGTTCGCAAGCGTCCATGGGGAAGATTTGCTGCGGAGATTAGAGATCCGGTGAAAAAGGCAAGAGTTTGGCTCGGTACATTTGATACGGCTGAAGAAGCGGCTCGTGCTTACGATGAAGCTGCTAGAGCTCTGAGAGGAGCCAAGGCAAAGACAAATTTCGCCGTTCCCTGCGACGATCAGAGTACAAGCCATAGCAGCACCGTGGAGTCTTCGAGCGGTCCAAGAAATCAGGACGACTCGAAGAAAGCTTTCAATTTGAACGGCAGGGGAACAAGGTTGGTCGAAATTAGCACTAGAACTCATCGGAATAGAGGGGCTAAAGACGCTTCGCGGACTGGCAACGATATCTATAAGAAATACAGGCGAAGCAGGGTTTCTGAAGTGCGGGATTGGCCAAACGATCCTGTACAGCAGTTCGGGTTCGATGCCGCTCCTTGCCACAGCGACTGCGATTCGTCGTCGTCTGTAGTAGTGGACAATGATGCTAATTCTGGCGAAGATTTCCCGTGTGATGTGAAACCCTTGCAGGAAAGTGGTTTTGATCTGAATCTTTACAAGGAATGGAGAAGCCCGGAGCGGCAGGATCGGAAAATGTTGCCAGATTTGAATCTTCCTCCCTGTGAAGATGATGCGGAAGATTACCGGGATTTTCTGGCCATATCGTTGCGGATCTGA___TGAGAACAGACGGCAATATTCTTGATTTCGTCTCCTCCGTCCGACGGGAGTTTGTTTGTGATCGCAAACGCTAATTACAGTCAATTTGCCGTGCTCAAAGGTGTGATCTGTTTTTCTTACAATTAATCCTTCTGAGTATTCGACGGATCCTATTGGTATGTAGGTCTGTTCTCAAGAAATTTTCTTTTATCTAAAAAAATAGTGAAAATATCTAGAATTACCACAATGGTCATCTTATTTTTGTGACTCTGGATTGCGAGTTGCTCTTTGAAATATACATTTGAGACCGGCGAGGCCAAATGGTCCCTAGTTATTTATTCGGGTCATCCTTTTTGGCTATAATACATAGTAGATTGTACAGAGAAGATTGTAATGGATTATGTTATTAGCAGTTTATGGTCAATTAGATTTGATTAATGGCCATTCTGATTTAATGAAACAGATTATGAAGTTTGACTCTAGCTATTTTTT

Fln Alignment:

Contig24142___FRGVRKRPWGRFAAEIRDPVKKARVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFAVPCDD
D5A9F4_______________FRGVRKRPWGRFAAEIRDPWKKARVWLGTFDTAEDAARAYDDAARALRGPKAKTNFALAADN

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
113	33	66			0.997452
166	25	75			0.996473
334	50		50		1.0
359	33		66		0.997452
397	33	66			0.997452
2048	80			20	0.995493
2177	5			84	0.999846
2296	50		50		1.0
2297	83	16			0.994512
2305		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain