SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24116

Length: 869 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene24116 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gulonolactone oxidase, putative n=1 Tax=Ricinus communis RepID=B9RS35_RICCO	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Genomic DNA, chromosome 5, P1 clone: MCD7	-	-	2.801e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	L-gulonolactone oxidase.	EC:1.1.3.8	-	8.406e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		8.406e-08	%
Sma3	Metabolic pathways	01100		8.406e-08	%

Source	Gene names
Sma3	At1g32300; At2g46740; At2g46750; At2g46760; At5g56470; At5g56490; F15N18_130; F27G20_8; F5D14.6; GSVIVT00026155001; GSVIVT00032453001; LOC_Os03g36530; OSIGBa0111E13.1; OSIGBa0113I06.5; OSJNBa0034E24.20; OSJNBa0034E24.8; Os01g0687800; Os02g0124400; Os02g01

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	D-arabinono-1,4-lactone oxidase activity	GO:0003885	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	D-arabinono-1,4-lactone oxidase	IPR007173	-	-
Sma3	Plant-specific FAD-dependent oxidoreductase	IPR010030	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G11540.1	D-arabinono-1,4-lactone oxidase family protein chr5:3703002-3704981 REVERSE LENGTH=585	61%
RefSeq	Arabidopsis thaliana	NP_196715.1	D-arabinono-1,4-lactone oxidase family protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002324238.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	C %	T %	Probability
243	83	16	0.999991
355	14	85	0.993533
411	33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain