SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24083

Length: 2422 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene24083
CATATGAATATGTTGTAGCAATGAGGTCACAGAGTGAGCCACCAGGGTTATCCATTGAGGGAGATCGACAGAGCATACATTCTTCACCAAGTAGTTCTACTGCAACAGAAATGAGTAGATCGAGTTCTCTTGGTTTGCAGTACAAGGGTGCATGGTGCACACCACCTAGAGTCTTTGTGGAACTTCAGGATGAAGTTATTCCACATTTGGGTCCTGGTCGAGTGCCATCCACAGTTGATCCAGATGCTTCAACTGTGCTAAATATGTCAGAAAACAAGCTGCAGAAGCGTCCAGTTAGAATCAGTGCTTGGAAACTAGCAAAACTGAACCCTAATGAGGCTATGAGAGCAGCAGCAAAGGCTAGGGAAAGTTCATCTGTTTTACGGCCTTTAGGGGCACGGTTGCCAGATACTGATTATAGTTCTAGTGGCAATGCTAGTAGTAGCAGGAGCAGTATGAGCACTGATTTTGGAATGAGGAGGGAATTAAGAGATGAACGGATGCCATCACCTTTAAAATCTACATATCCCCCGAGTCATGCTAGTAAGGATGAAATTGAAACTGGGACTCAAAGCAGAAGCAGCTATAGCAGTGCAAGTCATACAAATGACTCAGTTGTGTTAAGTCCTCTTCGTGTAGACTGCAGATATGGCTTGGATGCTGGGGTTCATATGTTAGCCCGTATAGATCGACCACAGAGGGAAATGCCTCCGACATTAACAGCAGATATACCAGACACAAGGCAGAGTTTACCCATCTGCAAATCTTGTTTGGAGCAACCTCTCTGTGCAGGGATGGCTCCTGCAAGTGACAGATATAAAGCACCTGATCATAAAAGTGTTGATGATGGATTGATGCGAAGTAACCTGGCTCTGATACAGTCAAATGGAAGCCAACTAAATAGAAATATTGTGGAAAATAAGAGCTCATCTGTTTTCTGGGATGAGGGAGCGGGGAGATATGTTTCAATGCCAATACCTGGAAGAACTGAACTCAGCAGAGTCATTGGAAAAGTTCATGCTCCAGAAGGTAATGCTGAGAGTGATGCTCCCAACAATCAAGTGTTTCCATCTCCTTTGCCAAGGCATCATATTTCAGTGGGTATTTCTTCAGGCTTACCGAGTTCTGTTGCCAAACATGACAATCTTCTGTATACTGAGAAATCCATCTTCTACGGGGGGGCCTCTAATTGCTCCAGCAGTGGAAATCAGTAAGAATGTTAATTCACCAAGGCTAAATTCACACCCTTCTGAACAAACTTCATCTGATCGCCAAGCTGTTTTTCCACATCAGGCTTACCAGGAAAGCAGGCCATTGCGTGGTTCAACAACACGTTCTCAATCTCCTGTATTTGTACCAAGGTCAATGCAAACAAAAGCTTCTAATCATCTACATCAGTAATTGCTGGCTTAATTATTGTAGCTGGGAGCTAATGGTGTCAGTAATTCAGTTTGGTTATCAAACAGTTTGCAGCTTGTGGGTGTCAAGTTCATTCTTGCAGATGGAGAACTTTAAGACATTACATGTCATTTATTTGATATTAACCAATTTTTATCAACAGTATCATGGTTTAATGGCATATTCTATTGCTGCTGGGTTTGTGAATTCTCATAAGGTTGTATCTGCAGCTTAGGTAGAAATCATAGTGGCAAAATGTAGCAATAGGAGACACTTTGGTTATCAGCTTAGAGATTAAGGTGCATGGTAAAGCGCCATGACCAGTATTGGCTGTTTTGGGCAACAGAGACTGTTGCAAGCCTTGCATCTTCATTCGTGGTAACTTACTGTATCGTTTATTGCAGGCATTATGAGATGTTTTCGAGGGGATGATATTCTGCTCCCTGTAAACTGACTGCGATTATGAAAATATTTTGAAAATTTCTCCAAGTAGCTGCTTTAGAACTTCAAAATAAAAATGCTTTGAGGTCCCCTGTTGCTCTACAAGGTTGGGTCTGGGTTATATGTCATGCTGCCTCTTCTCACCTCCATGGATATTTTGCGATGTCTTTGTTTACCTTGATGGTCTTGCCTTCAAAGATGCATCAGGCGCTGGGGCATCATCTTCAGAATATGGTACATATTAGAAAGCACCTCTGGTTAAAAGTTGTGTCTTTTGTGGCAAGTTTTCTGGGAGAAAGGATAACGAGGCATGAATAGAGGATTCAGCATCAATTCTTTACAATCCATCAATGATGCATCTAAAGACAAGGGCAAGTAGATATGTCAGAGACTTCTCAAGAGTTCTTACAGCAATGCACAAATAATATATCATACAAGTTTATGTTTATATTTGGACTTTCTAGTTTATGGCGTACTGTTCAATTTTCAAGGGCTTTACTCTCTCAAAATATATTTCCAAAGGTATAAAACATTCTGCATGTTTTCAGCATTTAATAGACACCGAATATCATATTTGGTTTAG

Ace file of the UniGene sp_v3.0_unigene24083 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S4Y7_RICCO	-	-	0.0	39%
FL-Next	sp=Probable S-acyltransferase At4g15080; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	40%

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Acyltransferases, Transferring groups other than amino-acyl groups.	EC:2.3.1.-	-	1.643e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid biosynthesis	00061	1.643e-08	%
Sma3	Tetracycline biosynthesis	00253	1.643e-08	%
Sma3	Lysine degradation	00310	1.643e-08	%
Sma3	Arginine and proline metabolism	00330	1.643e-08	%
Sma3	Histidine metabolism	00340	1.643e-08	%
Sma3	Tyrosine metabolism	00350	1.643e-08	%
Sma3	Benzoate degradation	00362	1.643e-08	%
Sma3	Lipopolysaccharide biosynthesis	00540	1.643e-08	%
Sma3	Glycerophospholipid metabolism	00564	1.643e-08	%
Sma3	Ether lipid metabolism	00565	1.643e-08	%
Sma3	Glycosphingolipid biosynthesis - ganglio series	00604	1.643e-08	%
Sma3	Toluene degradation	00623	1.643e-08	%
Sma3	Naphthalene degradation	00626	1.643e-08	%
Sma3	Aminobenzoate degradation	00627	1.643e-08	%
Sma3	Ethylbenzene degradation	00642	1.643e-08	%
Sma3	Butanoate metabolism	00650	1.643e-08	%
Sma3	Methane metabolism	00680	1.643e-08	%
Sma3	Limonene and pinene degradation	00903	1.643e-08	%
Sma3	Diterpenoid biosynthesis	00904	1.643e-08	%
Sma3	Carotenoid biosynthesis	00906	1.643e-08	%
Sma3	Anthocyanin biosynthesis	00942	1.643e-08	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	1.643e-08	%
Sma3	Isoquinoline alkaloid biosynthesis	00950	1.643e-08	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	1.643e-08	%
Sma3	Betalain biosynthesis	00965	1.643e-08	%
Sma3	Biosynthesis of unsaturated fatty acids	01040	1.643e-08	%
Sma3	Biosynthesis of type II polyketide backbone	01056	1.643e-08	%
Sma3	Biosynthesis of terpenoids and steroids	01062	1.643e-08	%
Sma3	Metabolic pathways	01100	1.643e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	1.643e-08	%

Source	Gene names
Sma3	At2g33640; At3g22180; At4g15080; F4P9.41; FCAALL.183; GSVIVT00002912001; GSVIVT00037591001; MKA23.9; OsI_32407; OsJ_28249; OsJ_30349; P0635G10.35; PHYPADRAFT_183259; PHYPADRAFT_188363; POPTRDRAFT_1079941; POPTRDRAFT_560234; POPTRDRAFT_575992; POPTRDRAFT_7

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3		GO:0008415	Molecular Function	-
Sma3	cell death	GO:0008219	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	-
Sma3	Chaperonin Cpn60	IPR001844	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002307912.1	predicted protein [Populus trichocarpa]	0.0	45%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q8L5Y5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 44 aas, putative chimeric sequence, your sequence is shorter than subject: 404 - 718

Fln protein: YEYVVAMRSQSEPPGLSIEGDRQSIHSSPSSSTATEMSRSSSLGLQYKGAWCTPPRVFVELQDEVIPHLGPGRVPSTVDPDASTVLNMSENKLQKRPVRISAWKLAKLNPNEAMRAAAKARESSSVLRPLGARLPDTDYSSSGNASSSRSSMSTDFGMRRELRDERMPSPLKSTYPPSHASKDEIETGTQSRSSYSSASHTNDSVVLSPLRVDCRYGLDAGVHMLARIDRPQREMPPTLTADIPDTRQSLPICKSCLEQPLCAGMAPASDRYKAPDHKSVDDGLMRSNLALIQSNGSQLNRNIVENKSSSVFWDEGAGRYVSMPIPGRTELSRVIGKVHAPEGNAESDAPNNQVFPSPLPRHHISVGISSGLPSSVAKHDNLLYTEKSIFYGGASNCSSSGNQ*

Protein Length: 405

Fln nts: CATATGAATATGTTGTAGCAATGAGGTCACAGAGTGAGCCACCAGGGTTATCCATTGAGGGAGATCGACAGAGCATACATTCTTCACCAAGTAGTTCTACTGCAACAGAAATGAGTAGATCGAGTTCTCTTGGTTTGCAGTACAAGGGTGCATGGTGCACACCACCTAGAGTCTTTGTGGAACTTCAGGATGAAGTTATTCCACATTTGGGTCCTGGTCGAGTGCCATCCACAGTTGATCCAGATGCTTCAACTGTGCTAAATATGTCAGAAAACAAGCTGCAGAAGCGTCCAGTTAGAATCAGTGCTTGGAAACTAGCAAAACTGAACCCTAATGAGGCTATGAGAGCAGCAGCAAAGGCTAGGGAAAGTTCATCTGTTTTACGGCCTTTAGGGGCACGGTTGCCAGATACTGATTATAGTTCTAGTGGCAATGCTAGTAGTAGCAGGAGCAGTATGAGCACTGATTTTGGAATGAGGAGGGAATTAAGAGATGAACGGATGCCATCACCTTTAAAATCTACATATCCCCCGAGTCATGCTAGTAAGGATGAAATTGAAACTGGGACTCAAAGCAGAAGCAGCTATAGCAGTGCAAGTCATACAAATGACTCAGTTGTGTTAAGTCCTCTTCGTGTAGACTGCAGATATGGCTTGGATGCTGGGGTTCATATGTTAGCCCGTATAGATCGACCACAGAGGGAAATGCCTCCGACATTAACAGCAGATATACCAGACACAAGGCAGAGTTTACCCATCTGCAAATCTTGTTTGGAGCAACCTCTCTGTGCAGGGATGGCTCCTGCAAGTGACAGATATAAAGCACCTGATCATAAAAGTGTTGATGATGGATTGATGCGAAGTAACCTGGCTCTGATACAGTCAAATGGAAGCCAACTAAATAGAAATATTGTGGAAAATAAGAGCTCATCTGTTTTCTGGGATGAGGGAGCGGGGAGATATGTTTCAATGCCAATACCTGGAAGAACTGAACTCAGCAGAGTCATTGGAAAAGTTCATGCTCCAGAAGGTAATGCTGAGAGTGATGCTCCCAACAATCAAGTGTTTCCATCTCCTTTGCCAAGGCATCATATTTCAGTGGGTATTTCTTCAGGCTTACCGAGTTCTGTTGCCAAACATGACAATCTTCTGTATACTGAGAAATCCATCTTCTACGGGGGGGCCTCTAATTGCTCCAGCAGTGGAAATCAGTAA___GAATGTTAATTCACCAAGGCTAAATTCACACCCTTCTGAACAAACTTCATCTGATCGCCAAGCTGTTTTTCCACATCAGGCTTACCAGGAAAGCAGGCCATTGCGTGGTTCAACAACACGTTCTCAATCTCCTGTATTTGTACCAAGGTCAATGCAAACAAAAGCTTCTAATCATCTACATCAGTAATTGCTGGCTTAATTATTGTAGCTGGGAGCTAATGGTGTCAGTAATTCAGTTTGGTTATCAAACAGTTTGCAGCTTGTGGGTGTCAAGTTCATTCTTGCAGATGGAGAACTTTAAGACATTACATGTCATTTATTTGATATTAACCAATTTTTATCAACAGTATCATGGTTTAATGGCATATTCTATTGCTGCTGGGTTTGTGAATTCTCATAAGGTTGTATCTGCAGCTTAGGTAGAAATCATAGTGGCAAAATGTAGCAATAGGAGACACTTTGGTTATCAGCTTAGAGATTAAGGTGCATGGTAAAGCGCCATGACCAGTATTGGCTGTTTTGGGCAACAGAGACTGTTGCAAGCCTTGCATCTTCATTCGTGGTAACTTACTGTATCGTTTATTGCAGGCATTATGAGATGTTTTCGAGGGGATGATATTCTGCTCCCTGTAAACTGACTGCGATTATGAAAATATTTTGAAAATTTCTCCAAGTAGCTGCTTTAGAACTTCAAAATAAAAATGCTTTGAGGTCCCCTGTTGCTCTACAAGGTTGGGTCTGGGTTATATGTCATGCTGCCTCTTCTCACCTCCATGGATATTTTGCGATGTCTTTGTTTACCTTGATGGTCTTGCCTTCAAAGATGCATCAGGCGCTGGGGCATCATCTTCAGAATATGGTACATATTAGAAAGCACCTCTGGTTAAAAGTTGTGTCTTTTGTGGCAAGTTTTCTGGGAGAAAGGATAACGAGGCATGAATAGAGGATTCAGCATCAATTCTTTACAATCCATCAATGATGCATCTAAAGACAAGGGCAAGTAGATATGTCAGAGACTTCTCAAGAGTTCTTACAGCAATGCACAAATAATATATCATACAAGTTTATGTTTATATTTGGACTTTCTAGTTTATGGCGTACTGTTCAATTTTCAAGGGCTTTACTCTCTCAAAATATATTTCCAAAGGTATAAAACATTCTGCATGTTTTCAGCATTTAATAGACACCGAATATCATATTTGGTTTAG

Fln Alignment:

Contig24083___YEYVVAMRSQSEPP-GLSIEGDRQXXXXXXXXXXXXXXXXXXSLGLQYKGAWCTPPRVFVELQDEVIPHLGPGRVPSTVDPDASTVLNMSENKLQKRPVRISAWKLAKLNPNEAMRAAAKARESSSVLRPLGAR-LPDTDYXXXXXXXXXXXXXSTDFG---MRRELR-DERMPSPLKSTYPPSHASKDEIETGTQSRSSYSSASHTNDSVVLSPLRVDCRYGLDAGVHMLARIDRPQREMPPTLTADIPDTRQSLPICKSCLEQPLCAGMAPASDRYKAPDHKSVDDGLMR----SNLALIQSNGSQLNRNIVENKSSSVFWDEGAGRYVSMPIPGRTELSRVIGKVHAPEGNAESDAPNNQVFPSPLPRHHISVGISSGL---PSSVAKHDNLLYTEKSIFYGG
Q8L5Y5_______________YEYVVAMRAMSEAPAGASIDEEIPNVLYSPSGSATTGFSGGSSLGLPYKGAWCTPPRVFVDYQDEVIPHLDPRMVPSTVDPDAAETAERG-NKIPKRPVKISAWKLAKLNSNEATRAAARARASSSVLRPIENRHLHDDELSSRSGTISVVSSVSTEANGATLSREIRNNDPMLSHCRNSYAPSQGSRDEYDTGTHSMSSLSSPSHVHETVTLSPL--------------------PQHHTAGHRFTAAAASNSSRP---------------PLNQATNHMIHSTFDEKIMQKGNHADPLLLPAPAASLLRDV---RRTSVVWDQEAGRYISVPATTSEPRTRFSSQ---NQPIPSSHMGNTQ---NPRPVGHPPQDSSSGRAPPPTQQQQGERLMYTGESIFFGG

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
635	66			33	0.997452
694		66	33		0.997452
727		66		33	0.997452
759		60		40	1.0
772		20		80	0.995493
795	80		20		0.995493
873	83		16		0.994512
942	16	83			0.994512
964		16		83	0.994512
1055		11		88	0.923564
1056		11	88		0.923564
1246		33		33	1.0
1352	80		20		0.995493
1424		25		75	0.996473
1512	66	33			0.997452
1514	66	33			0.997452
1776	33		66		0.997452
1777		66		33	0.997452
1778		66	33		0.997452
1779	66			33	0.997452
1823	25			75	0.996473
1824		25		75	0.996473
1825	25		75		0.996473
2025		83		16	0.994512
2103		75		25	0.996473
2132		25		75	0.996473
2133	75	25			0.996473
2134	75	25			0.996473
2135	25	75			0.996473
2176	33		66		1.0
2177	33			66	1.0
2180	66			33	1.0
2391	33		66		0.997452
2392		66	33		0.997452
2394		66	33		0.997452
2398			33	66	0.997452
2400		33		66	0.997452
2401	33		66		0.997452
2402	33			66	0.997452
2404	66		33		0.997452
2405		66		33	0.997452
2407	33			66	0.997452
2409	66		33		0.997452
2410	33			66	0.997452
2411		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain