SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24068

Length: 863 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene24068

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7STZ9_VITVI	-	-	0.0	40%
FL-Next	sp=Probable flavin-containing monooxygenase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	38%

Source	Gene names
Sma3	At5g45180; FMO2; GSVIVT00032310001; K18C1.6; POPTRDRAFT_200388; RCOM_1628210;

Source	GOs	Term	Type	Identity
Sma3	microsome	GO:0005792	Cellular Component	-
Sma3	intrinsic to endoplasmic reticulum membrane	GO:0031227	Cellular Component	-
Sma3	N,N-dimethylaniline monooxygenase activity	GO:0004499	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Flavin monooxygenase FMO	IPR000960	-	0.0	-
Sma3	Dimethylaniline monooxygenase, N-oxide-forming	IPR012143	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LMA1

Fln msg: your sequence is shorter than subject: 249 - 530

Fln protein: VLHTMDYSVLDKRSAYELIKGKRVVVIGFQKSAMDFAVECAEANKGGGYPCTMVFRTVHWTIPSYKRWAMSMFVELYLLWKLPLRKGVVLDDGTELGADLVVLGTGYDGEKKLKSILPTRFVDVLQKSADPLPLYRGLIHPHIPHMTILGYPESLSNLHSSEIRTQWLVHFLSGKFVLPSIKKMEADTENYFKYIKKITPFYWKSCLATFQIWDNDNLCRDMGRNPMRKKNWFCELFSPYSNLDYKEM*

Protein Length: 250

Fln nts: GGTTTTGCATACCATGGACTATTCAGTTTTGGATAAAAGGAGTGCTTATGAGCTTATCAAAGGAAAACGAGTTGTAGTTATTGGATTCCAGAAGTCAGCAATGGATTTTGCTGTGGAATGCGCTGAGGCAAATAAAGGAGGTGGCTATCCTTGTACAATGGTCTTCAGAACAGTGCACTGGACAATTCCTTCTTACAAGAGATGGGCAATGTCCATGTTTGTGGAGCTTTACCTTCTTTGGAAACTTCCCTTGAGAAAGGGGGTCGTACTAGATGATGGAACAGAGCTTGGAGCTGATCTTGTGGTATTGGGTACTGGTTATGATGGGGAGAAAAAACTGAAGAGCATACTTCCAACTCGTTTTGTAGACGTCCTCCAGAAATCAGCTGATCCACTTCCGTTGTACAGGGGGCTCATCCATCCACATATTCCTCATATGACAATCCTTGGCTATCCAGAAAGTTTATCAAATCTGCATTCTTCTGAAATACGTACTCAGTGGCTGGTCCATTTTCTGTCTGGCAAATTTGTCCTTCCAAGTATCAAGAAAATGGAGGCAGATACAGAAAACTACTTCAAGTATATCAAGAAAATCACACCCTTCTATTGGAAATCGTGTCTTGCCACTTTTCAGATATGGGACAATGATAATCTTTGCAGGGACATGGGACGGAATCCAATGAGAAAGAAGAATTGGTTTTGCGAGCTTTTCTCTCCATACAGTAATCTTGACTACAAAGAGATGTAG___ATAGTGGACTGTCCATGACAACAGAAACGCATTTTCGGAAGAGTTTTGTATGTTGAACACTGCAATGAGTTTGCTTAACTTGTTTTTGATTGTCTTGAGTTGTGGAACAGCTCTT

Fln Alignment:

Contig24068___VLHTMDYSVLDKRSAYELIKGKRVVVIGFQKSAMDFAVECAEANKG-GGYPCTMVFRTVHWTIPSYKRWAM--------------------------------------SMFVELYLLWKLPLRK-----------------------------------------------GVVLDDGTELGADLVVLGTGYDGEKKLKSILPTRFVDVLQKSADPLPLYRGLIHPHIPHMTILGYPESLSNLHSSEIRTQWLVHFLSGKFVLPSIKKMEADTENYFKYIKKITPFYWKSCLATFQIWDNDNLCRDMGRNPMRKKNWFCELFSPYSNLDYK
Q9LMA1_______________VMHSMDYCKLEKEEASTLLSGKKVAVIGFKKSAIDLALESALANQGEGGKACTMVVRTTHWGIPHYWVWGLPFFLFYSSRASQFLHDRPNQSFLRTLFCLLFSLLRAVVSKFIESYVLWKLPLEKYGLKPNHSFEEDYASCQMAIIPENFFEEADKGMIRFKKSSKWWFYEEGIVFEDGTTLEADVVILATGYDGKKKLKAIVPEPFRTWLEFPSGVMPLYRGTIHPLIPNMGFVGYVQSSSNLHTSELRSMWLSRLVDEKFRLPSKEKMLDQFLKEMEVTRNSSRFYKRHCISTFSIQHADDMCNDMGLNPWRKSNFLLEAFSPYGSQDYR

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
723	50			50	1.0
768		50	50		1.0
777		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain