SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24011

Length: 1001 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene24011

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] dbj\|BAF01151.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE28274.1\| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Ubiquitin-protein ligase, putative	-	-	3.923e-09	-

Source	Gene names
Sma3	At2g23140; At3g54850; B1139B11.27; F28P10.170; GSVIVT00018150001; GSVIVT00019617001; GSVIVT00024348001; GSVIVT00028576001; GSVIVT00029333001; GSVIVT00030906001; GSVIVT00035825001; OSJNBa0075G19.19-1; OSJNBa0075G19.19-2; Os01g0823900; Os06g0102700; Os08g01

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G08315.1	ARM repeat superfamily protein chr1:2620500-2621477 REVERSE LENGTH=325	47%
RefSeq	Arabidopsis thaliana	NP_849613.1	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002299200.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB80

Fln msg:

Fln protein: MEVKRTTAESLVNQLRSSSSSEEAQKEAVCELRLLAKWGDEHRISIAQAGAVPYLLDHLYSPDAKLQENAVTALLNLSIYAPNREVIMSSHGALDAIVHCLTGGRSLEAKQNAAAAIFSLLVVENYRPIVGDRPEVIRALLDLIRLGNPKCKKDALKALFHLALDPLNRPKLVSAGVVPVLFSLLMNSGMGIVEDATAVIALVAGCSESREAFKRIFGIEVLVDLLDTGSPRAQENAASALLNLVQCGGTQVAEDILDVQIAMPALSVLLNTGTPRCKSKVSSLLKLLLVHERRPASAMF*

Protein Length: 302

Fln nts: CGGTA_-_ATGGAGGTGAAGCGGACAACGGCTGAATCGCTGGTGAATCAGCTGAGATCCTCCTCATCATCGGAAGAAGCGCAGAAAGAAGCCGTCTGCGAGCTCCGGCTGCTGGCCAAATGGGGCGACGAGCACCGCATCTCGATAGCTCAAGCGGGCGCAGTGCCCTATCTTCTTGACCATCTATACTCCCCGGACGCTAAACTGCAAGAAAACGCTGTCACGGCCCTACTGAATCTCTCAATCTACGCCCCTAATCGTGAGGTGATAATGTCAAGCCACGGTGCCCTGGACGCCATCGTGCACTGCCTCACCGGCGGGAGGAGCCTGGAGGCCAAGCAGAACGCCGCCGCCGCTATTTTCAGCCTTCTCGTCGTCGAGAACTACAGGCCTATCGTAGGCGACCGCCCCGAGGTTATCAGGGCTCTTCTGGACCTTATTCGCCTGGGAAACCCTAAGTGCAAGAAGGATGCCCTAAAAGCCCTCTTCCATTTGGCTCTGGATCCGCTAAATAGGCCCAAACTGGTGTCCGCCGGAGTCGTTCCGGTGCTCTTTTCGCTATTGATGAACTCGGGGATGGGGATCGTCGAGGATGCCACGGCTGTTATAGCCCTGGTAGCGGGCTGCAGCGAGAGCAGAGAGGCATTTAAAAGGATATTTGGGATTGAAGTTCTGGTGGATTTGTTGGACACTGGGTCTCCGAGGGCCCAAGAGAATGCGGCTTCAGCGTTGCTGAATTTGGTCCAGTGCGGTGGGACGCAGGTCGCTGAGGATATCTTGGATGTCCAGATCGCCATGCCGGCTCTTAGTGTTCTTCTCAACACCGGGACCCCCAGGTGTAAGAGTAAAGTCAGTTCCTTGCTTAAGCTTTTGCTTGTTCATGAAAGACGGCCCGCGAGTGCTATGTTTTGA___ATGAATATGATATACACATGTGGGACTGGGCATCATCTAAATAAATAATTATTTGCTGTATTATTATCCCCAAATCTTGTGTATTTCAGTTCA

Fln Alignment:

Contig24011___MEVKRTTAESLVNQLRXXXXXXXAQKEAVCELRLLAKWGDEHRISIAQAGAVPYLLDHLYSPDAKLQENAVTALLNLSIYAPNREVIMSSHGALDAIVHCLTGGRSLEAKQNAAAAIFSLLVVENYRPIVGDRPEVIRALLDLIRLGNPKCKKDALKALFHLALDPLNRPKLVSAGVVPVLFSLLMNSGMGIVEDATAVIALVAGCSESREAFKRIFGIEVLVDLLDTGSPRAQENAASALLNLVQCGGTQVAEDILDVQIAMPALSVLLNTGTPRCXXXXXXXXXXXXXHERRPASAM
D5AB80_______________MDVKRTTAESLVNLLRSSSSSEEAQKDAVCELRLLAKWGDDQRISIVQAGAVPYLLDHLYSSNAKLQENAITALLNLSIYTPNREVIMSSRGALDAIVHCLTAGRSLEGKQNAAAAIFSLLVVESYRPIVGERPEAIRALLDLIRQGNPKCTRDALKTLFLLALYPLNRPKLVSAGVVPVIFSLLMNAGMGILEDATAVIAQVAGCSESEKVFKKIFGIEVLVDLLATGSPRVQENAASALLNLAQCGG--IADDILDVQFAMPALSLLLTSGTSRCKSKVSSLLSLLLAHERRPARGL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
152			66	33	0.997452
312	33	66			0.997452
314		33	66		0.997452
420		33	66		0.997452
719	16		83		0.994512
860		12	87		0.992554
928		75		25	1.0
977	66			33	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
341	352	CGC CGC CGC CGC	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain