SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23977

Length: 2267 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene23977
CTTTTACAGGAGAGCTGCCTGAAACTTACGGAGATTGCAAAACGTTGGTGCGTTTTAGAGTTAAAAACAACAGTCTGAATGGTGCCGTGCCCAAAGGAATTTGGGGATTGCCAAATGTTAAAATTATTGATCTAGGCTTCAATAATTTTGTCGGGGGAATTGATTCTGCCATCGGAAATGCAAAGCAATTAACAGAGTTGTGTATTCAGAATAATCAATTCTCCGGGATACTGGTACCCGAGATTGGCATGGCGAAGCTATTAGTCAAACTTGAAGCAAGCAATAATCACTTTTCAGGTCCAATACCAAAGGAAATTGGCAGCTTGAGGCAGTTGGGTGATCTGAATTTGCAGAAGAATATGTTGGAGGGATCCATCCCTGATGAAGTTGGTTCCTGTGATTCTTTGGCTGTTATTAATCTTGCAGAAAATAATTTGCAAGGATCAATTCCAGAGTCACTGGGATATATTGCTGATTTGAACTCCTTAAATATTTCAAACAACAAACTATCTGGTTCTGTTCCAGAGAGTCTTGGTGCACTGAAGCTCAGTTTTCTTGACTTATCCAACAATAAGTTAACTGGGCCCGTTCCAGATTCACTCATCAGTGAGGTTAACTTACAAAGCTTTTCAGGGAATCCAGGGCTCTGTGCTAAAAGATCTGGAAATGATAATTCTAATAATAACAATATAGTTGGGACTTGTTCTGATTCTCATTCTGGGAAAGGACCTAGGCAAATTGGAATTATCTCTGGGCTCATAATTGGCACAGCATTGTTAGTATTTGTGATTGGATTAGTAGTTTTTCAGCGAAAATATCACCAAAATCAAGTTGACTCAATGGATAAAACGGACAATTCTTCTTGGACCCTTACACCTTTTCATAACCTAAGTTTCTCTCAGGAAGAGATTTGCAAAGCTTTATTAGATGAAGAAAATGTTATAGGGAGTGGAGGATCGGGCAAGGTGTATCGCGTGGATTTGCGAACCAGTGAAACTGTAGCAGTAAAACGAATATGGACAGTGAACATCAACAAGAGGAGGGACAACGGTTTAAATAGATTGATGAAGGCAGAGGTGGATATCTTGGGAACAATTCGCCATAAAAATATTGTGAAGCTTTATTGTTGTTTGTCTAATGGTAATTCAAATCTATTGGTATATGAATACATGCCAAATGGGAATTTATTTGATGCTCTGCATAAAAATAATGAAGACAAGGCATCAGGAGGAAGTGGTTTGGACTTGGACTGGCCAACACGTTACAAGATTGCATTGGGAGCAGCCCATGGATTAGCATATCTTCATCATGGTTGCTCACCTGCAATTGTTCACAGAGATGTAAAATCTACCAATATTTTGCTGGATAAATCTTATGAGGCAAAGCTTGCTGATTTTGGTATTGCCAAATTTCTTCAAGCTCATTGTGGAAGGGACTCAACGACAGCTTTTGCAGGCACCCATGGTTATATTGCTCCTGAATATGGGTTCTCTTTGAGGGTTACAGAAAAGAGTGATGTCTACAGTTTTGGTGTGGTCTTGTTGGAACTGCTTACTGGCAAGCAACCAATTGAACCAGGATTTGGTGAGAACAAAGATATTGTATACTGGGTTTCACACAAGATTCGTTCCCAGGAAGATGCTCTTGAAGTTCTTGACTCCAGAATTTCCAGGTCGTTTAAAGAAGAAATGTTCAAGGTCCTGAAAATAGCAGTACATTGTACTTACAAACTCCCAGCACTGAGGCCAACCATGAGAGAAGTTGTACAGATGATGATGGATGCTGATCCTTGCAGCGGTGATTTCGGGGCAGTCGAAAAGGAAAAACTCCATGGAACACATATGTCAGGTTAAATTCTCAACAAAATGGTTATAAATTTTTCCATGGATCTTTGTCTGAGTTGTCCCACAGGTTAATTACCCGTAGGTAGGAAATGGAACCTGAGTTCTCAACCTCACAAATATAATTCCTTCATGTGTAGTTGGGCATTTCTTTCAAAAACTCAGTGATATGGTGAAGCAATCTTCTTCCTAATATACAGTTTGTTCTGATATAATCCTATTCTATTCTATTCTGTCTTTTATCTAGTTTTGTGTGCTAGACTAAGATGGTTAATTGGAGAGTTAATACTGACATTCTAGTCTTGTTTCTGTGTGTCTGGCTGAGTGAAGAGGAATCCGTGAGTGCTTCTCTGAACATTAAATGGCTTGTGGTATAATGTAAATTTAAGGATTATATATACATTAGATTATGATCTTTGACTCCAG

Ace file of the UniGene sp_v3.0_unigene23977 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9R6R4_RICCO	-	-	0.0	46%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	48%
Sma3	Receptor protein kinase CLAVATA1, putative	-	-	3.627e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	3.128e-18	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	1.164e-17	-

Source	Gene names
Sma3	AT1G28440; AT1G75820; AT3G49670; AT4G28490; AT5G25930; AT5G49660; AT5G65700; At1g09970; At1g09970/F21M12.36; At1g28440; At1g72180; At1g75820; At3g19700; At3g49670; At4g28490; At5g25930; At5g49660; At5g49660/MNI5_4; At5g65700; CLAVATA1; CLL1A; CLL1B; CLL2;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	aminopeptidase activity	GO:0004177	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	endosperm development	GO:0009960	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	microsporocyte differentiation	GO:0010480	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	gametophyte development	GO:0048229	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Peptidase S33	IPR002410	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Proline iminopeptidase	IPR005944	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G49660.1	Leucine-rich repeat transmembrane protein kinase family protein chr5:20161401-20164534 REVERSE LENGTH=966	46%
RefSeq	Arabidopsis thaliana	NP_199777.1	putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002301126.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: your sequence is shorter than subject: 617 - 998

Fln protein: FTGELPETYGDCKTLVRFRVKNNSLNGAVPKGIWGLPNVKIIDLGFNNFVGGIDSAIGNAKQLTELCIQNNQFSGILVPEIGMAKLLVKLEASNNHFSGPIPKEIGSLRQLGDLNLQKNMLEGSIPDEVGSCDSLAVINLAENNLQGSIPESLGYIADLNSLNISNNKLSGSVPESLGALKLSFLDLSNNKLTGPVPDSLISEVNLQSFSGNPGLCAKRSGNDNSNNNNIVGTCSDSHSGKGPRQIGIISGLIIGTALLVFVIGLVVFQRKYHQNQVDSMDKTDNSSWTLTPFHNLSFSQEEICKALLDEENVIGSGGSGKVYRVDLRTSETVAVKRIWTVNINKRRDNGLNRLMKAEVDILGTIRHKNIVKLYCCLSNGNSNLLVYEYMPNGNLFDALHKNNEDKASGGSGLDLDWPTRYKIALGAAHGLAYLHHGCSPAIVHRDVKSTNILLDKSYEAKLADFGIAKFLQAHCGRDSTTAFAGTHGYIAPEYGFSLRVTEKSDVYSFGVVLLELLTGKQPIEPGFGENKDIVYWVSHKIRSQEDALEVLDSRISRSFKEEMFKVLKIAVHCTYKLPALRPTMREVVQMMMDADPCSGDFGAVEKEKLHGTHMSG*

Protein Length: 618

Fln nts: CTTTTACAGGAGAGCTGCCTGAAACTTACGGAGATTGCAAAACGTTGGTGCGTTTTAGAGTTAAAAACAACAGTCTGAATGGTGCCGTGCCCAAAGGAATTTGGGGATTGCCAAATGTTAAAATTATTGATCTAGGCTTCAATAATTTTGTCGGGGGAATTGATTCTGCCATCGGAAATGCAAAGCAATTAACAGAGTTGTGTATTCAGAATAATCAATTCTCCGGGATACTGGTACCCGAGATTGGCATGGCGAAGCTATTAGTCAAACTTGAAGCAAGCAATAATCACTTTTCAGGTCCAATACCAAAGGAAATTGGCAGCTTGAGGCAGTTGGGTGATCTGAATTTGCAGAAGAATATGTTGGAGGGATCCATCCCTGATGAAGTTGGTTCCTGTGATTCTTTGGCTGTTATTAATCTTGCAGAAAATAATTTGCAAGGATCAATTCCAGAGTCACTGGGATATATTGCTGATTTGAACTCCTTAAATATTTCAAACAACAAACTATCTGGTTCTGTTCCAGAGAGTCTTGGTGCACTGAAGCTCAGTTTTCTTGACTTATCCAACAATAAGTTAACTGGGCCCGTTCCAGATTCACTCATCAGTGAGGTTAACTTACAAAGCTTTTCAGGGAATCCAGGGCTCTGTGCTAAAAGATCTGGAAATGATAATTCTAATAATAACAATATAGTTGGGACTTGTTCTGATTCTCATTCTGGGAAAGGACCTAGGCAAATTGGAATTATCTCTGGGCTCATAATTGGCACAGCATTGTTAGTATTTGTGATTGGATTAGTAGTTTTTCAGCGAAAATATCACCAAAATCAAGTTGACTCAATGGATAAAACGGACAATTCTTCTTGGACCCTTACACCTTTTCATAACCTAAGTTTCTCTCAGGAAGAGATTTGCAAAGCTTTATTAGATGAAGAAAATGTTATAGGGAGTGGAGGATCGGGCAAGGTGTATCGCGTGGATTTGCGAACCAGTGAAACTGTAGCAGTAAAACGAATATGGACAGTGAACATCAACAAGAGGAGGGACAACGGTTTAAATAGATTGATGAAGGCAGAGGTGGATATCTTGGGAACAATTCGCCATAAAAATATTGTGAAGCTTTATTGTTGTTTGTCTAATGGTAATTCAAATCTATTGGTATATGAATACATGCCAAATGGGAATTTATTTGATGCTCTGCATAAAAATAATGAAGACAAGGCATCAGGAGGAAGTGGTTTGGACTTGGACTGGCCAACACGTTACAAGATTGCATTGGGAGCAGCCCATGGATTAGCATATCTTCATCATGGTTGCTCACCTGCAATTGTTCACAGAGATGTAAAATCTACCAATATTTTGCTGGATAAATCTTATGAGGCAAAGCTTGCTGATTTTGGTATTGCCAAATTTCTTCAAGCTCATTGTGGAAGGGACTCAACGACAGCTTTTGCAGGCACCCATGGTTATATTGCTCCTGAATATGGGTTCTCTTTGAGGGTTACAGAAAAGAGTGATGTCTACAGTTTTGGTGTGGTCTTGTTGGAACTGCTTACTGGCAAGCAACCAATTGAACCAGGATTTGGTGAGAACAAAGATATTGTATACTGGGTTTCACACAAGATTCGTTCCCAGGAAGATGCTCTTGAAGTTCTTGACTCCAGAATTTCCAGGTCGTTTAAAGAAGAAATGTTCAAGGTCCTGAAAATAGCAGTACATTGTACTTACAAACTCCCAGCACTGAGGCCAACCATGAGAGAAGTTGTACAGATGATGATGGATGCTGATCCTTGCAGCGGTGATTTCGGGGCAGTCGAAAAGGAAAAACTCCATGGAACACATATGTCAGGTTAA___ATTCTCAACAAAATGGTTATAAATTTTTCCATGGATCTTTGTCTGAGTTGTCCCACAGGTTAATTACCCGTAGGTAGGAAATGGAACCTGAGTTCTCAACCTCACAAATATAATTCCTTCATGTGTAGTTGGGCATTTCTTTCAAAAACTCAGTGATATGGTGAAGCAATCTTCTTCCTAATATACAGTTTGTTCTGATATAATCCTATTCTATTCTATTCTGTCTTTTATCTAGTTTTGTGTGCTAGACTAAGATGGTTAATTGGAGAGTTAATACTGACATTCTAGTCTTGTTTCTGTGTGTCTGGCTGAGTGAAGAGGAATCCGTGAGTGCTTCTCTGAACATTAAATGGCTTGTGGTATAATGTAAATTTAAGGATTATATATACATTAGATTATGATCTTTGACTCCAG

Fln Alignment:

Contig23977___FTGELPETYGDCKTLVRFRVKNNSLNGAVPKGIWGLPNVKIIDLGFNNFVGGIDSAIGNAKQLTELCIQNNQFSGILVPEIGMAKLLVKLEASNNHFSGPIPKEIGSLRQLGDLNLQKNMLEGSIPDEVGSCDSLAVINLAENNLQGSIPESLGYIADXXXXXXXXXXXXXSVPESLGALKLSFLDLSNNKLTGPVPDSLISEVNLQSFSGNPGLCAKRSGXXXXXXXNIVGTCSDSHSGKGPRQI-GIISGLIIGTALLVFVIGLVVFQRKYHQ-NQVDSMDKTDNSSWTLTPFHNLSFSQEEICKALLDEENVIGSGGSGKVYRVDLRTSETVAVKRIWTV-NINKRRDNGLNRLMKAEVDILGTIRHKNIVKLYCCLSNGNSNLLVYEYMPNGNLFDALHKNNEDKASGGSGLDLDWPTRYKIXXXXXXXXXXXXXGCSPAIVHRDVKSTNILLDKSYEAKLADFGIAKFLQAHC-GRDSTTAFAGTHGYIAPEYGFSLRVTEKSDVYSFGVVLLELLTGKQPIEPGFGENKDIVYWVSHKIRSQEDALEVLDSRISRSFKEEMFKVLKIAVHCTYKLPALRPTMREVVQMMMDADP
Q19AV8_______________FAGNIPESLGTCTSLNRVRLGGNKFNGSVPSSFWGLPHISLLELKDNNFEGLISPDIANAKCLSQLVINGNTFTGSLPTEIGELRNLSEIIASNNFLTGALPPSVGKLQQLGKLDLSNNQLSGELPAEISSCKQLGEINLSKNQFSGSIPASVGTLPVLNYLDLSDNLLTGLIPSEFGNLKLNTFDVSNNRLSGAVPLAFANPVYEKSFLGNPELCSREAFNG-------TKSCSEERSERAKRQSWWWLLRCLFALSIIIFVLGLAWFYRRYRNFANAERKKSVDKSSWMLTSFHRLRFSEYEILDC-LDEDNVIVSDGASNVYKATLNNGELLAIKRLWSIYKTNASNDNG----FQAEVDTLGKIRHKNIVKLWCCCSKSDSNLLVYEYMPNGSLGDLLH--------GPKASVLDWPIRYKIALGAAQGLAYLHHGCVPAIVHRDVKSNNILLDEDYVAHVADFGVAKILQSCARGADSMSAIAGSYGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRRPVDPEFGENKDLVKWLCNKIEKKNGLHEVLDPKLVDCFKEEMTMVMRVGLLCTSVLPINRPSMRRVVEMLQEANP

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
164	85		14		0.993533
183			71	28	1.0
220		16	83		0.994512
274	80		20		0.995493
312		20		80	0.995493
359			25	75	0.996473
373		25	75		0.996473
409			25	75	0.996473
1536		80		20	0.999996
1538	80		20		0.999996
1567	90		10		0.90298
1614			10	90	0.90298
1619	90		10		0.90298
1620		90		10	0.90298
1621	90			10	0.90298
1650	42	57			1.0
1651	42	57			1.0
1654	42			57	1.0
1681		83	16		0.994512
1828	20	80			0.995493
1829	20			80	0.995493
1832		75		25	0.996473
1837		25		75	0.996473
1840		25		75	0.996473
1841		25		75	0.996473
1842			25	75	0.996473
2012	40	60			1.0
2030		40	60		1.0
2134		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
193	209	AGAAT AGAAT AGAAT AG	17

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain