SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23905

Length: 1403 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene23905 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG1896 Predicted hydrolases of HD superfamily	-	-	3.0e-38	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	e value	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Metal-dependent phosphohydrolase, HD domain	IPR003607	-	0.0	-
Sma3	Metal-dependent phosphohydrolase, HD subdomain	IPR006674	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G23820.2	Metal-dependent phosphohydrolase chr2:10140595-10142672 FORWARD LENGTH=257	74%
RefSeq	Arabidopsis thaliana	NP_973522.1	Metal-dependent phosphohydrolase [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002309375.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTN1

Fln msg: your sequence is longer than subject: 233 - 197

Fln protein: MNRIQSVPTLLSCSRVIVPSLAGIRSFRRVGVCKAMAGIDGVASQGVDSPSPSSAIDFLTLCQRLKTTKRTGWVYRGIRDPESIADHMYRMAAMALIAVDIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGVPKEEKNRRERKALDEMCGILGGGLIADEIYQLWNEYEENSSPEAKIVKDFDKVEMILQALEYESAQDKNLDEFFKSTAGKFQTDLGKAWAAEIVSRRNRS*

Protein Length: 234

Fln nts: CGTCGTGACCTTGGCTGTCACTCGAACTTCCCAACAATAAACTACCTTGCACGGAGCGGACAGCAATCGGA_-_ATGAATAGAATACAAAGCGTCCCCACTCTGCTATCCTGCTCTCGCGTTATAGTACCTTCTCTCGCGGGAATTCGGTCCTTTCGAAGAGTAGGAGTTTGCAAGGCGATGGCGGGAATCGATGGCGTGGCTTCTCAAGGGGTGGATAGTCCTTCCCCCTCCTCGGCCATTGATTTTCTCACTCTCTGCCAGCGCCTCAAGACTACAAAACGAACTGGTTGGGTTTACCGTGGTATAAGGGATCCTGAATCTATTGCTGATCACATGTATCGGATGGCTGCCATGGCTCTAATTGCTGTGGATATTCCTGGTATCGACAGAGACAAGTGCATAAAGATGGCAATTGTCCATGACATTGCTGAAGCCATTGTTGGTGATATTACCCCTTCAGATGGCGTGCCTAAGGAAGAAAAAAACCGGAGAGAGAGGAAAGCTTTGGATGAAATGTGTGGAATATTGGGTGGAGGATTGATAGCTGATGAAATATACCAGTTATGGAACGAGTATGAAGAGAATTCTTCTCCAGAAGCAAAAATTGTGAAAGATTTTGACAAGGTGGAAATGATTCTTCAAGCATTGGAATATGAAAGTGCCCAAGACAAGAATTTAGATGAGTTTTTCAAGTCAACAGCAGGAAAATTCCAAACTGATCTTGGCAAAGCATGGGCTGCTGAGATAGTTTCTAGGAGAAACAGAAGCTAA___CGACATGTGTGTAAATGATGTTATTCTTCCAAGGGAACTAAACTGTTTGGACTGTTAGACCTGTTTATTCATCTTCCAAGGTCATTCTTTATTTTCATAACCTCAAATAATTTTAAGGGGTTTATTTGAGGTCACAGATGCCTGCAACATCTCTAGACATGTTATTGTACCAGTTAGTCTGGATTAAAATAAAATCACTTCCATTTAGAAAATAAAGGAAGTTTGCATTCTGTTAGTCTAGAGGAATGTTGGAAATGAGGTGTCCTCTCTTTTTATCCTCTGTGATAATGGAGCCAATTTTAATCGGGTTACAAGCTGTGGGTGGAAAGGCATTGTATGATGTTTTTCCTTCAGTTCTTAGATATGTTAACTTGCATGGCAATTAGCATTCTTCTTGTGGCACATTGAAAATAGTGAAGTTTGGTTTATGATTAGAATTACTTGGTTTATGATTACGCATCTCAGTGAGTGTGTTGGGTATGAAGGGGCAACAAAGAGATCTAGATCAAGCAATGAGGGTTTGATTAACTAGATCAGATACAATGTTGTATGTAATTCCTCAGTTAGACCATTTTCCTAAGAAGGGAGCCCATGTAATTTTGGAATTTTAACGAAGAACTGTGATTGGGTGGC

Fln Alignment:

Contig23905___MAGIDGVASQGVDSPSPSSAIDFLTLCQRLKTTKRTGWVYRGIRDPESIADHMYRMAAMALIAVDIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGVPKEEKNRRERKALDEMCGILGGGLIADEIYQLWNEYEENSSPEAKIVKDFDKVEMILQALEYESAQDKNLDEFFKSTAGKFQTDLGKAWAAEIVSRRNRS
A9NTN1_______________MAGIDGSTSHGVDGPSSSSAIDFLTLCQRLKTTKRTGWIYRGIRDPESIADHMYRMAAMALIAVDIPGINRDKCIKMAIVHDIAEAIVGDIAPSDGVPKEEKSRRERQALDEMCGILGGGLRADEIHQLWNDYEENSSPEAKIVKDFDKVEMILQALEYETAQGKNLDEFFQSTAGKFQTDLGKAWAAEIVSRRNRS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
237		33		66	0.997452
859	75	25			0.996473
866	50		50		1.0
1158	8		91		1.0
1177			94	6	0.999998
1195		94		5	0.999996
1354	16		83		0.994512
1355		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain