SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23830

Length: 1369 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene23830

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-synt_10 domain containing protein	-	-	3.99931e-42	27%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	58%

Source	Gene names
Sma3	At1g08220; GSVIVT00022118001; OSJNBa0029B02.5; Os05g0176500; OsI_18653; OsJ_17313; POPTRDRAFT_721216; RCOM_0476330; VITISV_018663;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	serine-type peptidase activity	GO:0008236	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	mitochondrial proton-transporting ATP synthase complex assembly	GO:0033615	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase assembly factor ATP10, mitochondria	IPR007849	-	0.0	-
Sma3	Peptidase S28	IPR008758	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G08220.1	" FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro D	54%
RefSeq	Arabidopsis thaliana	NP_172300.2	uncharacterized protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002313557.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SN79

Fln msg:

Fln protein: MSLRTRLLPHLKAARCTAVTGSTGLSVFQRSSSYPLPQKTICRFFDFYQFGSKEAIEKERARLGDELNRGYFADISELKKHGGKVGFANKTLIPTIAAKRFPPLIVEFVDGRKHSLPVDVGNPNDHVESSDRTVNLHATLLCLSFRANAPAMIDSWTLPFLETFKTKSNVQLYEISFIDSWLLSLNPIKRLLLRTMRKSEISDGYQGLQRHVVYAFGDHYDLRKELNILNLLTGYIFLLDSKGRIRWQGFGIASDDEVSSMLSCASWLLEEQCK*

Protein Length: 276

Fln nts: ATGCATCGTGAAAATAAACCGCTTTGGACCAGGATGCTTCTCCTACCTCTGTATAAAACTCGAGAAACCCGGGCTGATATAAAACCCTGAATAAAACGAGGGCAGAACGTCAATTCTTATGCAGCTGTCGATAAACCATCGTTTAAGCTTTGCATGGAAAATTTGATCAATTCCCCCTTATTCGTTTTCTGGCCTCGAGGTACACAATAATAACAGGCAGTTCAAGGCGACTTCATTTTCGATTTACAGTTTCAGTGAAACA_-_ATGAGTTTGAGAACCAGGCTTCTACCCCACTTGAAGGCAGCAAGATGCACAGCTGTCACAGGGTCAACTGGATTATCAGTTTTTCAGCGGTCGTCTTCATATCCACTGCCACAGAAGACTATTTGCCGATTCTTTGACTTTTATCAGTTTGGCAGCAAGGAGGCCATCGAGAAGGAGCGCGCAAGGCTTGGGGACGAGTTAAATAGAGGCTATTTTGCAGACATTTCTGAGCTGAAGAAGCATGGTGGCAAGGTTGGATTTGCAAACAAGACTCTTATTCCAACTATTGCTGCTAAAAGGTTCCCTCCGTTAATTGTGGAATTTGTGGATGGTAGAAAACATTCTCTGCCTGTAGACGTTGGAAACCCAAATGACCATGTAGAGAGCAGCGACAGAACTGTCAATCTACATGCTACACTCCTATGTCTCTCTTTTCGTGCCAATGCTCCGGCTATGATTGACTCTTGGACTCTACCATTTCTGGAAACCTTCAAAACTAAATCAAATGTCCAATTGTATGAGATATCTTTTATAGATTCGTGGCTGTTATCGCTTAATCCTATTAAGCGTTTGCTTCTCCGTACAATGCGGAAATCTGAAATCAGCGATGGTTATCAGGGTCTTCAGAGACATGTTGTCTATGCATTTGGTGATCATTATGACTTGAGGAAAGAGCTCAACATATTGAACCTTCTAACAGGTTATATATTTTTGCTAGACAGCAAAGGTAGAATACGCTGGCAAGGTTTTGGGATAGCTTCAGATGACGAGGTGTCGTCAATGCTTTCATGTGCGTCTTGGCTGCTTGAAGAGCAATGCAAGTAG___TTATTGTAATTTCTATCGATGTGGTTCACATTTCTCATGAATCTAACTGTTATTTGGAAATTAATATGGGCTTCCTACCAATTAGTGAGTCTCCACAGCTTCGAGTCTTTTGAAAATTAGACTTTCCAACTAATAATGGATATGGCATATATATGTAAAATCATCAATTCTTTCTACGTATGTCTTGGCTACTGGCTATTTGCTGTTGGAATCTACTGATTTGGTTCATATTTTTTATTGATCTCACCGTTATTTGGAAAATGAAGATGGACTTTCTACGAT

Fln Alignment:

Contig23830___SYPLPQKTICRFFDFYQFGSKEAIEKERARLGDELNRGYFADISELKKHGGKVGFANKTLIPTIAAKRFPPLIVEFVDGRKHSLPVDVGNPNDHVESSDRTVNLHATLLCLSFRANAPAMIDSWTLPFLETFKTKSNVQLYEISFIDSWLLSLNPIKRLLLRTMRKSEISDGYQGLQRHVVYAFGDHYDLRKELNILNLLTGYIFLLDSKGRIRWQGFGIASDDEVSSMLSCASWLLEEQ
D7SN79_______________SHHLAHRTSTRFLDIYQLGNKEAFEKERARLADEMNRGYFADMSEFKQHGGKIAMANKIIIPAMAAMKFPALEVNYSDGRSLKLPI---SSHGNEAGTSKLDIPKASLLCLSFRASSQAMIDSWSKPFFDAFSDSKNVQLYEVSFVDSWFLSLNPIKRLLLRIMKKSK-PDGKSVLQRQIVYSFGDHYYFRKELKILNLLTGYMFLVDKFGRIRWQGFGLAAEEELASLLSCTTLLLEEK

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
139			33	66	0.997452
807		16		83	0.994512
810		16		83	0.994512
811	83		16		0.994512
813		83	16		0.994512
814	16		83		0.994512
816		16		83	0.994512
819	83			16	0.994512
820			16	83	0.994512
821		83	16		0.994512
824	83		16		0.994512
826		16		83	0.994512
828	83	16			0.994512
829			83	16	0.994512
831	16		83		0.994512
863	50			50	1.0
919			12	87	0.992554
1047		13		86	0.999973
1066	50		50		1.0
1108		45	54		1.0
1109		45		54	1.0
1126		45	54		1.0
1146	55			44	1.0
1159		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain