SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23825

Length: 1780 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene23825 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Branched-chain-amino-acid aminotransferase n=1 Tax=Picea sitchensis RepID=B8LQL0_PICSI	-	-	78%
FL-Next	sp=Branched-chain-amino-acid aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Sma3	Branched-chain-amino-acid aminotransferase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Branched-chain-amino-acid transaminase.	EC:2.6.1.42	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Valine, leucine and isoleucine degradation	00280	%
Sma3	Valine, leucine and isoleucine biosynthesis	00290	%
Sma3	Pantothenate and CoA biosynthesis	00770	%
Sma3	Glucosinolate biosynthesis	00966	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AT1G10070; At1g10060; At1g10070; At1g50090; At1g50110; At3g19710; At3g49680; At5g65780; B0103C08-B0602B01.8; BCA1; BCA2; BCAT; BCAT1; BCAT2; BCAT3; BCAT4; BCAT5; BCAT6; BCAT7; CHLREDRAFT_187392; CHLREDRAFT_206169; F2J10.4; F2J10.5; F6H11.110; GSVIVT000106

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	branched-chain-amino-acid transaminase activity	GO:0004084	Molecular Function	-
Sma3	methionine-oxo-acid transaminase activity	GO:0010326	Molecular Function	-
Sma3	branched chain family amino acid metabolic process	GO:0009081	Biological Process	-
Sma3	branched chain family amino acid biosynthetic process	GO:0009082	Biological Process	-
Sma3	branched chain family amino acid catabolic process	GO:0009083	Biological Process	-
Sma3	glucosinolate biosynthetic process	GO:0019761	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class IV	IPR001544	-	-
Sma3	Branched-chain amino acid aminotransferase II	IPR005786	-	-
Sma3	Aminotransferase, class IV, conserved site	IPR018300	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G49680.1	ATBCAT-3, BCAT3 branched-chain aminotransferase 3 chr3:18422768-18425473 FORWARD LENGTH=413	70%
RefSeq	Arabidopsis thaliana	NP_201379.2	branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002310326.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQL0

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 337 - 422

Fln protein: LTLIGITWGLESKKTDYMYLMKCCQDGEFCEGDLRPFGNIDLSPSAGVLNYGQGLFEGLKAHRTYDGRILLFRPEENALRMIMGAERMCMTAPSIEQFVEAVKQTILANKRWIPPAGKGSLYIRPLLLGSGAILGLAPAPEITFLIYVSPVGNYFKEGLEPIQLQVETKYHRATPGGTGGVKAIGNYAPVLKIQHGAKAKGFSDVLYLDAINNKYLEEVSSCNIFVVKDKIISTPALSGSVLPGITRKSIIEVARSRGYVVHERLVHVDELMNADEVFCTGTAVVISAVGSITHLDRRLIYRNGAPGEVSQELYSTLTSIQMGLVEDSMGWTMEVK*

Protein Length: 338

Fln nts: ATCGTCACGGCCTAAAGCTGCAGAACTGTATACTGACCTTTGCAGCCAAACTGATTCAATATAAATAAATTCTTCCATTCATCATCTCATCGTTATCAAAGATCAGCGTCCGAACCTCCTCTACTTCCTCAGCTCAGACAAGAAACATCGATAATTATGGCTATGGCTGCAATCCGTAGCCAGAGATTCAGGACTCAGCTCATAAAATTCCCAAATCTGGCGACAAGCCGCTCAATGTCTTCTACTGCCGCTAAAGAAGAAGAACGAGACGCGACGGAGCAACTCTACCACTATTTTCCTGTGACAAAGGGGGCATATTTTAATTTCCAAAGCAACAGGCCACGGATTCGACTAGGGAGCTCTATCTCTTTCTCCCCCTATTCCTCGACGGGAACGCTCCAGCAGTATGGAAGGGAACATTGCGTATCTCGCTATCACAATCTTGGAGCATTACACACGCAAGCAGAAGCAGTAGCCACAAGTGCCTCTGAGGAAGTTGATGAACTAGCTGACATTGATTGGGATAACCTGGGGTTTGGAATCCAAAAAAACAGATTACATGTACCTTATGAAATGTTGCCAAGATGGAGAGTTCTGTGAAGGAGATCTTCGTCCTTTTGGAAATATTGACCTAAGCCCATCAGCTGGTGTCTTGAATTATGGACAGGGTTTATTCGAAGGATTGAAAGCACATAGGACATATGATGGGCGAATCCTTCTCTTTCGTCCAGAAGAGAATGCCTTGCGAATGATAATGGGTGCAGAACGTATGTGTATGACAGCCCCATCAATAGAACAATTTGTGGAGGCTGTAAAACAAACAATCTTGGCCAACAAGCGCTGGATACCGCCTGCTGGCAAAGGCTCTCTTTATATCCGCCCATTACTTCTTGGTAGTGGAGCTATATTAGGACTTGCCCCAGCTCCAGAGATCACATTTCTTATATATGTTTCTCCTGTTGGAAACTATTTCAAGGAAGGATTGGAACCAATTCAATTGCAGGTTGAAACAAAATATCATCGTGCCACTCCAGGTGGAACTGGAGGGGTGAAGGCTATAGGCAATTATGCACCAGTGTTGAAAATACAACATGGTGCCAAAGCAAAAGGATTTTCTGATGTGCTGTATCTTGATGCAATCAACAACAAGTACCTTGAGGAAGTTTCCTCCTGCAACATCTTTGTGGTGAAGGATAAAATAATCTCGACTCCAGCGCTCAGTGGATCCGTACTTCCTGGAATTACGAGGAAAAGCATCATTGAGGTGGCCCGTAGTCGAGGTTATGTGGTCCATGAGCGTTTGGTACATGTGGATGAGTTGATGAATGCAGATGAAGTCTTTTGCACAGGCACAGCAGTGGTTATTTCTGCTGTGGGCAGTATCACTCATCTCGATAGAAGATTGATTTATAGGAATGGAGCTCCAGGAGAAGTTTCGCAGGAATTGTATTCAACTCTTACAAGCATTCAGATGGGTTTGGTTGAGGATAGCATGGGATGGACAATGGAGGTGAAGTAG___TTGTTACCATACCTGATTGCACGCACATTGCATATTCTACTCAGTGGCACTCAGACCTACAATATGACGGTTCTCAACATGATGGTCCATCTACTGCTCAAGAAACTAATTTCGCAATGACAAGAATGTAAATGATTCTTTGGTTTCATTTGTAAGAAATAAAAATGTATCAACACTGGTAGAAGGATATGACATTTGTATATTTCTATATCATTTTTATAGCCAGTTTCATGTTATATTTTCATATATGAAATTGTTTAC

Fln Alignment:

Contig23825___LIGITW---GLESKKTDYMYLMKCCQDGEFCEGDLRPFGNIDLSPSAGVLNYGQGLFEGLKAHRTYDGRILLFRPEENALRMIMGAERMCMTAPSIEQFVEAVKQTILANKRWIPPAGKGSLYIRXXXXXXXXXXXXXXXPEITFLIYVSPVGNYFKEGLEPIQLQVETKYHRATPGGTGGVKAIGNYAPVLKIQHGAKAKGFSDVLYLDAINNKYLEEVSSCNIFVVKDKIISTPALSGSVLPGITRKSIIEVARSRGYVVHERLVHVDELMNADEVFCTGTAVVISAVGSITHLDRRLIYRNGAPGEVSQELYSTLTSIQMGLVEDSMGWTMEVK
B8LQL0_______________LSNIDWDDLGFGIRKTDYMYLMKCGEDGVFSGGDLFPFGNIELSPSAGVLNYGQGLFEGLKAYRRADGRIVLFRPEENALRLTTGAERMCMAAPSVEQFVEAVKQTVLANKRWIPPFGKGSLYIRPLLLGSGAVLGLAPAPEVTFLIYVSPVGNYFKEGLAPIQLQVETKYHRATPGGTGNVKTIGNYAPVLKVQRSAKTEGFSDVLYLDAINKKYLEEVSSCNIFVVKDKTVSTPALHGTILSGVTRKSIIEVARSRGYEVHERLVSVDELMDADEVFCTGTAVVVSPVGSITYLDRRVTYGNGAPGEVSQELYSALTSIQMGLADDNMGWTIEVK

SNPs (tot: 4)

Position	A %	C %	G %	Probability
240	50		50	1.0
1694	66	33		0.997452
1695	66	33		0.997452
1697		33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain