SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23790

Length: 2865 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene23790
ATGGGAAGGCAAGCCGCTCAAGGATTGCGAGTGCAAGTATCCGTGCCTCCGTGGATTAGGCATTACCGTTGGACAGAGAAATGAAAAATTTCGAAATTTTCGGGAGGTGCAAGAAGGGAGTTACCAAGATCGAAGGGAGGGTTGTCCTTCGGAAAGCGTCTCTTCTGGATGTCAAGGATGTATCTGCCAGCGTTGGAGATCGTCTATTCGAGTTGCTGCAACAGAAGGTGAATTTTCAGCTCGTCAGTTGCGACCATATAGATCAAGAAACGGGCCAGGGTTTACGTAGCCGTCCTGCTCATTTAGAATGGAAATATCTGCTCCCCTCGCTGGAATACGCTAGTAAGGATTCAGAACACCGAATCAGCTTCGAGTGGGCTCCTGAGATGGGAATCCCTGGCGCTGTACTGGTGACAAACAATCACCCCCGAGAATTCTTTCTGAAAGAGCTTTCCATTCAAATCCCCGGAAAAGCCGATATTCGTTTCCTGTGCAACTCCTGGATCTATCCCAAGTTGATGACTCGATTCTACTCCGATCTAATCGCTGAACGAGTCTTCTTTGCAAATAATAGCTATCTTCCGGATGAAACGCCGTTAGGTCTGGTGGCTTTGAGGAACGTAGAGCTGGTGAGATTGAGAGGAAATGGAACGGGCAAAAGGAATACATGGGATCGCATTTATGACTACGATGTTTACAATGATCTGGGCGATCCTGACACCAAGAAGGAGTTAGAAAGGAAAGTGTTGGGTGTATGGCAGTTCTTGGGATCTCCCCAGCAGGTGTAGAACTGGTCGTCCGCGTTCTAAAACCAGTCAGGCTTTCGAGAGCATGAACCGGCTATGCAGCCTTACACAGAGCTTCTATATTCCCTCAGACGAACAATTTCCGCAGGAGTGCCTTTCAGACTTCAGAGCTCATTTCCTCAAAGCTTTCTCTAAAGTAGTTATACCCGCCATAATGTCAGCTGTTAAGCCTGAGTTTGCCAGTTTGAAGGAAGTTCGAGGTCTCTATAGTAAGGGAATTTCATTTTTGACTAACATTACAGCCAGTTTAGCCAAAGAAGTCCTTCCCGGTCAGACGATAAAAGGGATTATGAATACAGACGATCAAGCTATACTCAAGTTTCCGCTTCCCACTATTATTAGCAAGGATGACGCCGCATGGAAGACAGAGGAGGAGTTTGCCCGCCAGACGCTTTCTGGAGTGAATCCGATGGTCATTCAATGTTTACAAAGGTTTCCACCGTCAGGTCACCTGAACGCACAAATCTATGGTCCCCAACAAAGTGCAATCACCGCTGAACATATTCTTAAAAGCCTAGATGGCATCTCGGTGGAGGAGGCTATTAAATCGAAGAGGCTCTTTATATTGGACTACTATGACGCTTACATGCCCTACGTCGAGCTCGTGAACCAGCTTCCTACCAGCAAAGCCTACGCTACCCGTTCACTTTTCTTCCTGGCCGACAGCGGAACTCTAAAGCCTGTGGCCATTGAGCTGTGTTTGCCTCCCACGTCAGTGGGCTTGGGTTCAAGACAAGTCTACACTCCTGACTATAGCGGTGAAGATAAAGGGTGGTTATGGCAACTAGCCAAAGCTCATGTGCGGGCAAACGATTCCGGTTATCATCAGTTGGTTAGCCATTGGCTCAGGACTCATGCTGTGGTGGAGCCATTTATCATTGCTACCCATAGACATTTGAGCAAACTGCACCCACTTCACAAGTTGCTGATACCTCACTTTCGCAATACTATGGAGATCAATCGATCCGCTCGTCAGTCGTTGATAAATGCAGGAGGCATAATCGAGCAATGTTTTACGAGTGGTAAATATTCTATGCAAATTTCGGCCAAAGCATACATGGATTGGAGATTCAACGAGCAAGGACTGCCAGCTGATCTCCTTAAAAGGAGTATGGCTGTTGTGTCCGACCCAAGTGATAAAGCAAAAGGTGTGACGCTTGTGATAGAAGATTATCCGTATGCAGTGGACGGGCTTGAAATATGGGCGGCCTTGAAATGTTGGGTATCTGACTACACATCGCTGTATTACAAGGACGATCAAAGTGTAGAGAGCGATCGAGAACTTCAAGCATGGTGGAAAGAGATCGTGGAAGTGGGCCACGGAGATAAGAAGGGTGATGAGGGAGGATGGTACAAGATGAAGAGTGTGGAGGATGTGAAAGAAGGCATTACCACACTCATTTGGATCGCTTCTGCGCACCATGCAGCGGTTAATTTCGGGCAGTACGGCTATGCGGGATTCATGCCCAATCACCCCAGCACCACCGGGAAACTTATTCCAGAGAAAGGATCGACACAATACTTAGACTTCCTCCGTGACCCGGAAGCCTATTTCCTAAAAACTGTGTCCAATCCAAAGACCTGTGCCACTACCATGGCTGTCCTGGAGCTTCTGTCGAAGCATTCTACCGGCGAGGTATACCTGGGGCAGGGCTCCGCCTCCGATTGGACAGATGACTCTCGCGTTGAAACAGCATTCCAACGCTTTCGCTCCAAGCTACTTGAGATAGAGCAGAATATCAAGATTAGGAACACAGATCAAAGGTTGAAAAACCGGCGCGGCCCCGCAGAGGTTCCCTACACGCTGTTATACCCGGGCACTTCCGATACTGGCGAGACAGGTGCTGGACTTACATTTCGAGGAATTCCCAACAGCGTCTCTATATAGTAGAGCATTCACTCCGTCTCTTAGTTCGTAGATATACAATATTCTTCTGCTACACTTTTATGCTTGAGTGAACTATATCCTTTAATAAAGTTATTAACGTACTCGATATTCTGTTTTTATTTTAATAAATATGTTTCGGTAAGATGACAAATTCGTTGCGTTTCATAATAC

Ace file of the UniGene sp_v3.0_unigene23790 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase n=1 Tax=Picea sitchensis RepID=B8LLK5_PICSI	-	-	55%
FL-Next	sp=Linoleate 9S-lipoxygenase A; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	48%
Sma3	Lipoxygenase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Lipoxygenase.	EC:1.13.11.12	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Linoleic acid metabolism	00591	%
Sma3	alpha-Linolenic acid metabolism	00592	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	At1g17420; At1g55020; At1g67560; At1g72520; At3g45140; AtLOX6; B1168A08.24; B1168A08.28-1; B1168A08.28-2; CM-LOX1; CM-LOX2; F12B7.11; F14C21.3; F14C21.54; F28G4.10; F28P22.29; GSVIVT00008869001; GSVIVT00013069001; GSVIVT00019960001; GSVIVT00022800001; GSV

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	lipoxygenase activity	GO:0016165	Molecular Function	-
Sma3	phytoene dehydrogenase activity	GO:0016166	Molecular Function	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G22400.1	LOX5 PLAT/LH2 domain-containing lipoxygenase family protein chr3:7927011-7931167 FORWARD LENGTH=886	47%
RefSeq	Arabidopsis thaliana	NP_188879.2	lipoxygenase 5 [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002311617.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P38415

Fln msg: Separated hits, possible frame ERROR between 752 and 760,

Fln protein: MKNFEIFGRCKKGVTKIEGRVVLRKASLLDVKDVSASVGDRLFELLQQKVNFQLVSCDHIDQETGQGLRSRPAHLEWKYLLPSLEYASKDSEHRISFEWAPEMGIPGAVLVTNNHPREFFLKELSIQIPGKADIRFLCNSWIYPKLMTRFYSDLIAERVFFANNSYLPDETPLGLVALRNVELVRLRGNGTGKRNTWDRIYDYDVYNDLGDPDTKKELERKVLxxxxSSWDLPSRCRTGRPRSKTSQAFESMNRLCSLTQSFYIPSDEQFPQECLSDFRAHFLKAFSKVVIPAIMSAVKPEFASLKEVRGLYSKGISFLTNITASLAKEVLPGQTIKGIMNTDDQAILKFPLPTIISKDDAAWKTEEEFARQTLSGVNPMVIQCLQRFPPSGHLNAQIYGPQQSAITAEHILKSLDGISVEEAIKSKRLFILDYYDAYMPYVELVNQLPTSKAYATRSLFFLADSGTLKPVAIELCLPPTSVGLGSRQVYTPDYSGEDKGWLWQLAKAHVRANDSGYHQLVSHWLRTHAVVEPFIIATHRHLSKLHPLHKLLIPHFRNTMEINRSARQSLINAGGIIEQCFTSGKYSMQISAKAYMDWRFNEQGLPADLLKRSMAVVSDPSDKAKGVTLVIEDYPYAVDGLEIWAALKCWVSDYTSLYYKDDQSVESDRELQAWWKEIVEVGHGDKKGDEGGWYKMKSVEDVKEGITTLIWIASAHHAAVNFGQYGYAGFMPNHPSTTGKLIPEKGSTQYLDFLRDPEAYFLKTVSNPKTCATTMAVLELLSKHSTGEVYLGQGSASDWTDDSRVETAFQRFRSKLLEIEQNIKIRNTDQRLKNRRGPAEVPYTLLYPGTSDTGETGAGLTFRGIPNSVSI*

Protein Length: 873

Fln nts: ATGGGAAGGCAAGCCGCTCAAGGATTGCGAGTGCAAGTATCCGTGCCTCCGTGGATTAGGCATTACCGTTGGACAGAGAA_-_ATGAAAAATTTCGAAATTTTCGGGAGGTGCAAGAAGGGAGTTACCAAGATCGAAGGGAGGGTTGTCCTTCGGAAAGCGTCTCTTCTGGATGTCAAGGATGTATCTGCCAGCGTTGGAGATCGTCTATTCGAGTTGCTGCAACAGAAGGTGAATTTTCAGCTCGTCAGTTGCGACCATATAGATCAAGAAACGGGCCAGGGTTTACGTAGCCGTCCTGCTCATTTAGAATGGAAATATCTGCTCCCCTCGCTGGAATACGCTAGTAAGGATTCAGAACACCGAATCAGCTTCGAGTGGGCTCCTGAGATGGGAATCCCTGGCGCTGTACTGGTGACAAACAATCACCCCCGAGAATTCTTTCTGAAAGAGCTTTCCATTCAAATCCCCGGAAAAGCCGATATTCGTTTCCTGTGCAACTCCTGGATCTATCCCAAGTTGATGACTCGATTCTACTCCGATCTAATCGCTGAACGAGTCTTCTTTGCAAATAATAGCTATCTTCCGGATGAAACGCCGTTAGGTCTGGTGGCTTTGAGGAACGTAGAGCTGGTGAGATTGAGAGGAAATGGAACGGGCAAAAGGAATACATGGGATCGCATTTATGACTACGATGTTTACAATGATCTGGGCGATCCTGACACCAAGAAGGAGTTAGAAAGGAAAGTGTTGGGxxxxxxxxxCAGTTCTTGGGATCTCCCCAGCAGGTGTAGAACTGGTCGTCCGCGTTCTAAAACCAGTCAGGCTTTCGAGAGCATGAACCGGCTATGCAGCCTTACACAGAGCTTCTATATTCCCTCAGACGAACAATTTCCGCAGGAGTGCCTTTCAGACTTCAGAGCTCATTTCCTCAAAGCTTTCTCTAAAGTAGTTATACCCGCCATAATGTCAGCTGTTAAGCCTGAGTTTGCCAGTTTGAAGGAAGTTCGAGGTCTCTATAGTAAGGGAATTTCATTTTTGACTAACATTACAGCCAGTTTAGCCAAAGAAGTCCTTCCCGGTCAGACGATAAAAGGGATTATGAATACAGACGATCAAGCTATACTCAAGTTTCCGCTTCCCACTATTATTAGCAAGGATGACGCCGCATGGAAGACAGAGGAGGAGTTTGCCCGCCAGACGCTTTCTGGAGTGAATCCGATGGTCATTCAATGTTTACAAAGGTTTCCACCGTCAGGTCACCTGAACGCACAAATCTATGGTCCCCAACAAAGTGCAATCACCGCTGAACATATTCTTAAAAGCCTAGATGGCATCTCGGTGGAGGAGGCTATTAAATCGAAGAGGCTCTTTATATTGGACTACTATGACGCTTACATGCCCTACGTCGAGCTCGTGAACCAGCTTCCTACCAGCAAAGCCTACGCTACCCGTTCACTTTTCTTCCTGGCCGACAGCGGAACTCTAAAGCCTGTGGCCATTGAGCTGTGTTTGCCTCCCACGTCAGTGGGCTTGGGTTCAAGACAAGTCTACACTCCTGACTATAGCGGTGAAGATAAAGGGTGGTTATGGCAACTAGCCAAAGCTCATGTGCGGGCAAACGATTCCGGTTATCATCAGTTGGTTAGCCATTGGCTCAGGACTCATGCTGTGGTGGAGCCATTTATCATTGCTACCCATAGACATTTGAGCAAACTGCACCCACTTCACAAGTTGCTGATACCTCACTTTCGCAATACTATGGAGATCAATCGATCCGCTCGTCAGTCGTTGATAAATGCAGGAGGCATAATCGAGCAATGTTTTACGAGTGGTAAATATTCTATGCAAATTTCGGCCAAAGCATACATGGATTGGAGATTCAACGAGCAAGGACTGCCAGCTGATCTCCTTAAAAGGAGTATGGCTGTTGTGTCCGACCCAAGTGATAAAGCAAAAGGTGTGACGCTTGTGATAGAAGATTATCCGTATGCAGTGGACGGGCTTGAAATATGGGCGGCCTTGAAATGTTGGGTATCTGACTACACATCGCTGTATTACAAGGACGATCAAAGTGTAGAGAGCGATCGAGAACTTCAAGCATGGTGGAAAGAGATCGTGGAAGTGGGCCACGGAGATAAGAAGGGTGATGAGGGAGGATGGTACAAGATGAAGAGTGTGGAGGATGTGAAAGAAGGCATTACCACACTCATTTGGATCGCTTCTGCGCACCATGCAGCGGTTAATTTCGGGCAGTACGGCTATGCGGGATTCATGCCCAATCACCCCAGCACCACCGGGAAACTTATTCCAGAGAAAGGATCGACACAATACTTAGACTTCCTCCGTGACCCGGAAGCCTATTTCCTAAAAACTGTGTCCAATCCAAAGACCTGTGCCACTACCATGGCTGTCCTGGAGCTTCTGTCGAAGCATTCTACCGGCGAGGTATACCTGGGGCAGGGCTCCGCCTCCGATTGGACAGATGACTCTCGCGTTGAAACAGCATTCCAACGCTTTCGCTCCAAGCTACTTGAGATAGAGCAGAATATCAAGATTAGGAACACAGATCAAAGGTTGAAAAACCGGCGCGGCCCCGCAGAGGTTCCCTACACGCTGTTATACCCGGGCACTTCCGATACTGGCGAGACAGGTGCTGGACTTACATTTCGAGGAATTCCCAACAGCGTCTCTATATAG___TAGAGCATTCACTCCGTCTCTTAGTTCGTAGATATACAATATTCTTCTGCTACACTTTTATGCTTGAGTGAACTATATCCTTTAATAAAGTTATTAACGTACTCGATATTCTGTTTTTATTTTAATAAATATGTTTCGGTAAGATGACAAATTCGTTGCGTTTCATAATAC

Fln Alignment:

Contig23790___KIEGRVVLRKASLLDVKDVSASVGDRLFELLQQKVNFQLVSCDHIDQETG-QGLRSRPAHLEWKYLLPSLEYASKDSEHRISFEWAPEMGIPGAVLVTNNHPREFFLKELSIQ-IPGKADIRFLCNSWIYPKLMTRFYSDLIAERVFFANNSYLPDETPLGLVALRNVELVRLRGNGTGKRNTWDRIYDYDVYNDLGDPDTKKELERKVLGxxxSSWDLPSRCRTGRPRSKTSQAFESMNRLCSLTQSFYIPSDEQFPQECLSDFRAHFLKAFSKVVIP---AIMSAVKPEFASLKEVRGLYSKGISFLTNITASLAKEVLPGQTIKGIMNTDDQAILKFPLPTIISKDDAAWKTEEEFARQTLSGVNPMVIQCLQRFPPSGHLNAQIYGPQQSAITAEHILKSLDGISVEEAIKSKRLFILDYYDAYMPYVELVNQLPTSKAYATRSLFFLADSGTLKPVAIELCLP-PTSVGLG-SRQVYTPDYSGEDKGWLWQLAKAHVRANDSGYHQLVSHWLRTHAVVEPFIIATXXXXXXXXXXXXXXXXHFRNTMEINRSARQSLINAGGIIEQCFTSGKYSMQISAKAYMDWRFNEQGLPADLLKRSMAVVSDPSDKAKGVTLVIEDYPYAVDGLEIWAALKCWVSDYTSLYYKDDQSVESDRELQAWWKEIVEVGHGDKKGDEGGWYKMKSVEDVKEGITTLIWIASAHHAAVNFGQYGYAGFMPNHPSTTGKLIPEKGSTQYLDFLRDPEAYFLKTVSNPKTCATTMAVLELLSKHSTGEVYLGQGSASDWTDDSRVETAFQRFRSKLLEIEQNIKIRNTDQRLKNRRGPAEVPYTLLYPGTSDTGETGAGLTFRGIPN
P38415_______________KVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSVQSDPANGLQGKHSNPAYLE-NFLLTLTPLAAGETAFGVTFDWNEEFGVPGAFVIKNMHINEFFLKSLTLEDVPNHGKVHFVCNSWVYPSF--RYKSD----RIFFANQPYLPSETPELLRKYRENELVTLRGDGTGKREAWDRIYDYDVYNDLGNPDQGKENVRTTLGxxxADYPYPRRGRTGRPPTRTDPKSESRIPLI-LSLDIYVPRDERFGHLKMSDFLTYALKSIVQFILPELHALFDGTPNEFDSFEDVLRLYEGGIKLPQGPLFKALTDAIPLEMIRELLRTDGEGILRFPTPLVIKDSKTAWRTDEEFAREMLAGVNPVIISRLEEFPPKSKLDPELYGNQNSTITAEHIEGKLDGLTIDEAINSNKLFILNHHDVLIPYLRRINTT-TTKTYASRTLLFLQDNGSLKPLAIELSLPHPDGDQFGVTSKVYTPSDQGVE-GSIWQLAKAYVAVNDSGVHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLYPHFRDTMNINALARQILINAGGVLESTVFPSKFAMEMSAVVYKDWVFPDQALPADLVKRGVAV--EDSSSPHGVRLLIDDYPYAVDGLEIWSAIKSWVTDYCSFYYGSNEEILKDNELQAWWKEVREVGHGDKK-NEPWWAEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRKFMPEPGTPEYEELKKNPDKAFLKTITAQLQTLLGVSLIEILSRHTTDEIYLGQRESPEWTKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFP-TSE-----GGLTGKGIPN

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
64		25		75	0.996473
418	11		88		0.923564
505		14	85		0.993533
573		50	50		1.0
575	25		75		0.996473
2191	87	12			0.992554
2201		12		87	0.992554
2208			12	87	0.992554
2218	87	12			0.992554
2219		12		87	0.992554
2220	12			87	0.992554
2248		85		14	0.993533
2262	16		66	16	0.988813
2269		87		12	0.992554
2271	12		75	12	0.975346
2273	12		87		0.992554
2281		85	14		0.993533
2390		33	66		1.0
2392			22	77	0.999999
2428	10		90		0.90298
2431		10		90	0.90298
2436			88	11	0.923564
2437			66	33	1.0
2439	11		88		0.923564
2465	11	88			0.923564
2467	44		55		1.0
2468			87	12	0.992554
2469			87	12	0.992554
2473		14		85	0.993533
2480		12		87	0.992554
2535		14	85		0.993533
2537		14	85		0.993533
2539			83	16	0.994512
2544	16		16		0.988813
2546	16	83			0.994512
2609	80		20		0.995493
2617	80			20	0.995493
2646		25		75	0.996473
2662		25	75		0.996473
2674	25	75			0.996473
2681	75		25		0.996473
2686	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain