SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23635

Length: 3095 nt

UniGene Fasta

>sp_v3.0_unigene23635
TAGTAAGGTTTTATTTTGTGCCTATAAAAGCAGATCGGGCAGGGCCAGGGGGTTGTAGTAAGGTTTTATTTTGGAGTGTGCGAGACCAAGTGCCTGTGCAAGCGAACAAGATGAGGAAGTGGGCGGTGCCAACTGCTCTGTTACTGCTCATCATTCTCACATTTATCCCGCATCACAGTCCCCATCTTAGAGCCAACGCAGAGGAGGCGAGCCCTGTCGATGAGAATGCCAGTCCTCCGAAGGTGGAGGAAGGCATCGGTGGAGCCATTCCGGATGCACTCTCTACGGACGCAAATGTTGCGCAGAGGGAGTCAGAGTCTATTTCCCGGAAGACATTGCGGGCCAATGCCCAGAAATTCGAGTTCCAGGCAGAGGTTTCGAGGCTGATGGACATCCTCATCAACTCTCTCTACAGCAACAAGGATATCTTCTTGCGAGAACTCATCTCAAATGCCTCTGATGCTTTGGATAAAATCAGATTTATGGCTCTCACAGACAAGAATGTGCTGGGAGAAGGTGACAATACCAGGCTCGACATCAAGATCAAATTGGATAAAGAAAACAAGATACTGTCAATCCGAGATCGTGGGATAGGAATGACTAAGGAGGATCTCATAAAAAATCTGGGGACAATTGCCAAATCTGGAACTTCAGCTTTTCTGGAACAAATGCAAAAAGGTGGAGATTTGAACCTTATTGGCCAGTTTGGAGTAGGATTTTATTCAGTCTACCTAGTTGCTGACCATGTGGAAGTTATTAGCAAGAACAATGATGACAAACAGTACATATGGGAATCGAAAGCTGATGGAGCTTTTGCGGTATCTGAAGATACAGAGAATGAACCACTTGGACGTGGCACAGAGATCAGATTGCACCTTAAAGATGAAGCCAGCGAATATTTAGATGAGACTAAATTGAAAGATCTGGTAAAGAAATATTCTGAATTCATTAATTTCCCCATCTATCTCTGGGCAAGCAAAGAAGTTGATGTAGAGGTCCCAGCAGATGAAGAATCAGAATCCAGCGAGGAAGAGGAAAAGAGTGAAAGTTCCTCAGATGAAGAAGAATCAGAGGGCGAGGAAACTGAAAGCAAGTCTAAGACGAAGACAGTCAAGGAAACTACTTATGAGTGGGAACTTCTAAATGATGTCAAGGCAGTCTGGCTCCGGAATCCAAAGGAGGTCACTGATGAAGAATATGCCAAATTCTACCATTCTTTGGCAAAGGATTTTAGTGAGGAAAAACCCTTAGCATGGAGCCACTTCACTGCAGAAGGTGATGTTGAGTTCAAGTCCATTCTATTCATTCCGCCAAAGGCACCCCAGGACCTTTATGAAAGTTACTACAATGCCAAGGCCAATATCAAGTTGTATGTCAGGCGTGTTTTCATTTCTGATGAATTTGAAGAATTCCTTCCCAAGTACCTAGGCTTCCTTATGGGTATTGTAGATTCAGACACTTTGCCACTGAATGTATCACGAGAAATGCTTCAACAGCACAACAGTTTGAAGACAATAAAGAAGAAGCTAATTCGCAAAGCTTTAGATATGATTCGTCGCATTGCAGAAGAGGACCCTGATGAATCAGATGCAAAGGGAAAAACAGATGCCGAGTCAGAATCAGAACCAGATACTGAAAAGAAAGGAAAGTATGTCAAGTTCTGGAATGAGTTTGGCAAGTCAATAAAGCTTGGAATAATTGAGGATGCATCAAACAGGAACCGCCTTGCAAAACTTCTGAGATTTGAAAGCACAAAGTCTGGCAATAAACTGGCATCGTTGGACCAATACATATCAAGAATGAAACCGGGCCAGAAAGACATATATTACATCACTGGAACTAGCAAGGAGCAATTGGAGAAGTCCCCATTCCTTGAGAAATTGAAGAAGAAAAACTACGAGGTTATCTTCTTCACAGACCCAGTCGATGAGTACTTAATGCAGTACTTGATGGATTACGAGGACAAGAAATTTCAGAATGTTTCTAAAGAAGGCCTTAAGATTGGGAAAGATTCAAAGGACAAGGAAATTAAAGATTCTTTCAAAGAGTTAACTAACTGGTGGAAGGATGTTCTTTCCAGCGAAAATGTAGATTCAGTGAAAATAAGTAACAGACTGGACAACACCCCTGGAGTTGTTGTCACTTCAAAATATGGTTGGAGTGCAAACATGGAGAGAATTATGCAGTCGCAAACTCTATCAGATGCTAACAGACAAAGTTACATGCGTGGAAAGAGGGTACTCGAGATTAATCCAAGGCATCCTATTATTAAAGAACTCCGTGAAAGGGTCACACAGAATCCAGAGGAAGAAAATATAAAGCAAACTGCAAGGCTGATCTACCAGACAGCATTGATGGAAAGTGGATTCATCCTTAATGACCCGAAGGAATTTGCCTCGAGCATTTACTCAACAATCAAGACTACTCTGAACGTGAACCCCGATGCTACAGTCGAGGAAGAAGATGAAACAGAAGAAGAGGTTGAGGTTGAAACAAAGGAAGATGTAGAGAAGGTGGAGACAAAAGAGGATGCAACAGAAGGAAAATTTGCGAAAGAGGAGATCATCGAGGATGCTGTTGAGGAGCAATATGAGGAGAGCGTTAACGATGAGTTGTAGATAATCGTATAGGACTCAGGGTTACGGCCCAGGAATTTTGGAGGCTTGTTGGTTAGAGACATAGGTGTTAAAAATGGTGTGTGCTAGATGTCCTTTGTCATTTCTCATGGAATTTAGGGTTACTAAAATGTTTGAAATTACTTGCCATTAATTTTGGCAGTATCAAAGAGCAAGAAAATTCTCTTTATATGATTTTCACTCTTAGCGACGTTAAATGAAAAGGGATGGTAATCCGTTCCATTTTTATGCATTTTCTAAAACATTTGACGAGCATGTTCCCTAACTGGGTTAAAGTTTAAACCGATGCAAGATTTCTTGCAGCAAGCAGCAGCCAAGTGACACCACTACTTGTTTCTCTTTTAAAGCAATCCATATTTTTAAAAAGCGCTTGACCTATTTTCTCTCACCTGTGGAATTAGGGTTACCATATGATGTTGCTATTCTGTTTTATTGTTGGGATCTTAGCTTCAATACTCG

Ace file of the UniGene sp_v3.0_unigene23635

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Endoplasmin homolog; AltName: Full=Glucose-regulated protein 94 homolog; Short=GRP-94 homolog; Flags: Precursor gb\|AAA16785.1\| heat shock protein 90 [Catharanthus roseus]	-	-	75%
FL-Next	tr=GRP94; Pinus taeda (Loblolly pine).	-	-	97%
Sma3	GRP94	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Molecular chaperone, heat shock protein, endoplasmin	IPR015566	-	-
Sma3	Heat shock protein Hsp90	IPR001404	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G24190.1	SHD, HSP90.7, AtHsp90.7, AtHsp90-7 Chaperone protein htpG family protein chr4:12551902-12555851 REVERSE LENGTH=823	74%
RefSeq	Arabidopsis thaliana	NP_974606.1	endoplasmin-like protein [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002307732.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A7YAU9

Fln msg:

Fln protein: MRKWAVPTALLLLIILTFIPHHSPHLRANAEEASPVDENASPPKVEEGIGGAIPDALSTDANVAQRESESISRKTLRANAQKFEFQAEVSRLMDILINSLYSNKDIFLRELISNASDALDKIRFMALTDKNVLGEGDNTRLDIKIKLDKENKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFLEQMQKGGDLNLIGQFGVGFYSVYLVADHVEVISKNNDDKQYIWESKADGAFAVSEDTENEPLGRGTEIRLHLKDEASEYLDETKLKDLVKKYSEFINFPIYLWASKEVDVEVPADEESESSEEEEKSESSSDEEESEGEETESKSKTKTVKETTYEWELLNDVKAVWLRNPKEVTDEEYAKFYHSLAKDFSEEKPLAWSHFTAEGDVEFKSILFIPPKAPQDLYESYYNAKANIKLYVRRVFISDEFEEFLPKYLGFLMGIVDSDTLPLNVSREMLQQHNSLKTIKKKLIRKALDMIRRIAEEDPDESDAKGKTDAESESEPDTEKKGKYVKFWNEFGKSIKLGIIEDASNRNRLAKLLRFESTKSGNKLASLDQYISRMKPGQKDIYYITGTSKEQLEKSPFLEKLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKIGKDSKDKEIKDSFKELTNWWKDVLSSENVDSVKISNRLDNTPGVVVTSKYGWSANMERIMQSQTLSDANRQSYMRGKRVLEINPRHPIIKELRERVTQNPEEENIKQTARLIYQTALMESGFILNDPKEFASSIYSTIKTTLNVNPDATVEEEDETEEEVEVETKEDVEKVETKEDATEGKFAKEEIIEDAVEEQYEESVNDEL*

Protein Length: 837

Fln nts: TAGTAAGGTTTTATTTTGTGCCTATAAAAGCAGATCGGGCAGGGCCAGGGGGTTGTAGTAAGGTTTTATTTTGGAGTGTGCGAGACCAAGTGCCTGTGCAAGCGAACAAG_-_ATGAGGAAGTGGGCGGTGCCAACTGCTCTGTTACTGCTCATCATTCTCACATTTATCCCGCATCACAGTCCCCATCTTAGAGCCAACGCAGAGGAGGCGAGCCCTGTCGATGAGAATGCCAGTCCTCCGAAGGTGGAGGAAGGCATCGGTGGAGCCATTCCGGATGCACTCTCTACGGACGCAAATGTTGCGCAGAGGGAGTCAGAGTCTATTTCCCGGAAGACATTGCGGGCCAATGCCCAGAAATTCGAGTTCCAGGCAGAGGTTTCGAGGCTGATGGACATCCTCATCAACTCTCTCTACAGCAACAAGGATATCTTCTTGCGAGAACTCATCTCAAATGCCTCTGATGCTTTGGATAAAATCAGATTTATGGCTCTCACAGACAAGAATGTGCTGGGAGAAGGTGACAATACCAGGCTCGACATCAAGATCAAATTGGATAAAGAAAACAAGATACTGTCAATCCGAGATCGTGGGATAGGAATGACTAAGGAGGATCTCATAAAAAATCTGGGGACAATTGCCAAATCTGGAACTTCAGCTTTTCTGGAACAAATGCAAAAAGGTGGAGATTTGAACCTTATTGGCCAGTTTGGAGTAGGATTTTATTCAGTCTACCTAGTTGCTGACCATGTGGAAGTTATTAGCAAGAACAATGATGACAAACAGTACATATGGGAATCGAAAGCTGATGGAGCTTTTGCGGTATCTGAAGATACAGAGAATGAACCACTTGGACGTGGCACAGAGATCAGATTGCACCTTAAAGATGAAGCCAGCGAATATTTAGATGAGACTAAATTGAAAGATCTGGTAAAGAAATATTCTGAATTCATTAATTTCCCCATCTATCTCTGGGCAAGCAAAGAAGTTGATGTAGAGGTCCCAGCAGATGAAGAATCAGAATCCAGCGAGGAAGAGGAAAAGAGTGAAAGTTCCTCAGATGAAGAAGAATCAGAGGGCGAGGAAACTGAAAGCAAGTCTAAGACGAAGACAGTCAAGGAAACTACTTATGAGTGGGAACTTCTAAATGATGTCAAGGCAGTCTGGCTCCGGAATCCAAAGGAGGTCACTGATGAAGAATATGCCAAATTCTACCATTCTTTGGCAAAGGATTTTAGTGAGGAAAAACCCTTAGCATGGAGCCACTTCACTGCAGAAGGTGATGTTGAGTTCAAGTCCATTCTATTCATTCCGCCAAAGGCACCCCAGGACCTTTATGAAAGTTACTACAATGCCAAGGCCAATATCAAGTTGTATGTCAGGCGTGTTTTCATTTCTGATGAATTTGAAGAATTCCTTCCCAAGTACCTAGGCTTCCTTATGGGTATTGTAGATTCAGACACTTTGCCACTGAATGTATCACGAGAAATGCTTCAACAGCACAACAGTTTGAAGACAATAAAGAAGAAGCTAATTCGCAAAGCTTTAGATATGATTCGTCGCATTGCAGAAGAGGACCCTGATGAATCAGATGCAAAGGGAAAAACAGATGCCGAGTCAGAATCAGAACCAGATACTGAAAAGAAAGGAAAGTATGTCAAGTTCTGGAATGAGTTTGGCAAGTCAATAAAGCTTGGAATAATTGAGGATGCATCAAACAGGAACCGCCTTGCAAAACTTCTGAGATTTGAAAGCACAAAGTCTGGCAATAAACTGGCATCGTTGGACCAATACATATCAAGAATGAAACCGGGCCAGAAAGACATATATTACATCACTGGAACTAGCAAGGAGCAATTGGAGAAGTCCCCATTCCTTGAGAAATTGAAGAAGAAAAACTACGAGGTTATCTTCTTCACAGACCCAGTCGATGAGTACTTAATGCAGTACTTGATGGATTACGAGGACAAGAAATTTCAGAATGTTTCTAAAGAAGGCCTTAAGATTGGGAAAGATTCAAAGGACAAGGAAATTAAAGATTCTTTCAAAGAGTTAACTAACTGGTGGAAGGATGTTCTTTCCAGCGAAAATGTAGATTCAGTGAAAATAAGTAACAGACTGGACAACACCCCTGGAGTTGTTGTCACTTCAAAATATGGTTGGAGTGCAAACATGGAGAGAATTATGCAGTCGCAAACTCTATCAGATGCTAACAGACAAAGTTACATGCGTGGAAAGAGGGTACTCGAGATTAATCCAAGGCATCCTATTATTAAAGAACTCCGTGAAAGGGTCACACAGAATCCAGAGGAAGAAAATATAAAGCAAACTGCAAGGCTGATCTACCAGACAGCATTGATGGAAAGTGGATTCATCCTTAATGACCCGAAGGAATTTGCCTCGAGCATTTACTCAACAATCAAGACTACTCTGAACGTGAACCCCGATGCTACAGTCGAGGAAGAAGATGAAACAGAAGAAGAGGTTGAGGTTGAAACAAAGGAAGATGTAGAGAAGGTGGAGACAAAAGAGGATGCAACAGAAGGAAAATTTGCGAAAGAGGAGATCATCGAGGATGCTGTTGAGGAGCAATATGAGGAGAGCGTTAACGATGAGTTGTAG___ATAATCGTATAGGACTCAGGGTTACGGCCCAGGAATTTTGGAGGCTTGTTGGTTAGAGACATAGGTGTTAAAAATGGTGTGTGCTAGATGTCCTTTGTCATTTCTCATGGAATTTAGGGTTACTAAAATGTTTGAAATTACTTGCCATTAATTTTGGCAGTATCAAAGAGCAAGAAAATTCTCTTTATATGATTTTCACTCTTAGCGACGTTAAATGAAAAGGGATGGTAATCCGTTCCATTTTTATGCATTTTCTAAAACATTTGACGAGCATGTTCCCTAACTGGGTTAAAGTTTAAACCGATGCAAGATTTCTTGCAGCAAGCAGCAGCCAAGTGACACCACTACTTGTTTCTCTTTTAAAGCAATCCATATTTTTAAAAAGCGCTTGACCTATTTTCTCTCACCTGTGGAATTAGGGTTACCATATGATGTTGCTATTCTGTTTTATTGTTGGGATCTTAGCTTCAATACTCG

Fln Alignment:

Contig23635___MRKWAVPTAXXXXXXXTFIPHHSPHLRANAEEASPVDENASPPKVEEGIGGAIPDALSTDANVAQRESESISRKTLRANAQKFEFQAEVSRLMDILINSLYSNKDIFLRELISNASDALDKIRFMALTDKNVLGEGDNTRLDIKIKLDKENKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFLEQMQKGGDLNLIGQFGVGFYSVYLVADHVEVISKNNDDKQYIWESKADGAFAVSEDTENEPLGRGTEIRLHLKDEASEYLDETKLKDLVKKYSEFINFPIYLWASKEVDVEVPADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLNDVKAVWLRNPKEVTDEEYAKFYHSLAKDFSEEKPLAWSHFTAEGDVEFKSILFIPPKAPQDLYESYYNAKANIKLYVRRVFISDEFEEFLPKYLGFLMGIVDSDTLPLNVSREMLQQHNSLKTIKKKLIRKALDMIRRIAEEDPDESDAKGKTDAESESEPDTEKKGKYVKFWNEFGKSIKLGIIEDASNRNRLAKLLRFESTKSGNKLASLDQYISRMKPGQKDIYYITGTSKEQLEKSPFLEKLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKIGKDSKDKEIKDSFKELTNWWKDVLSSENVDSVKISNRLDNTPGVVVTSKYGWSANMERIMQSQTLSDANRQSYMRGKRVLEINPRHPIIKELRERVTQNPEEENIKQTARLIYQTALMESGFILNDPKEFASSIYSTIKTTLNVNPDATXXXXXXXXXXXXXXXXXXXXXXXXXXXATEGKFAKEEIIEDAVEEQYEESVNDEL
A7YAU9_______________MRKWAVPTALFLLIILTFVPHQSPHLRANAE-ASPADENASPPKVEEGIGGAIPDALSTDADVAQRESESISRKTLRANAQKFEFQAEVSRLMDILINSLYSNKDIFLRELISNASDALDKIRFMALTDKNVLGEGDNTRLDIKIKLDKENKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFLEQMQKGGDLNLIGQLGVGFYSVYLVADHVEVISKNNDDKQYIWESKADGAFAVSEDTENEPLGRGTEIRLHLKDEASEYLDETKLKDLVKKYSEFINFPIYLWASKEVDVEVPADEESESSEEEEKSESSSDEEESEAEETESKSKTKTVKETTYEWELLNDVKAVWLRNPKEVTDEEYAKFYHSLAKDFSEEKPLAWSHFTAEGDVEFKSILFIPPKAPHDLYESYCNAKANIKLYVRRVFISDEFEEFLPKYLGFLMGIVNSDTLPLNVSREMLQQHNSLNTIKKKLIRKALDMIRRIAEEDLDESDAKGKTDAESESEPDTEKKGKYVKFWNEFGKSIKLGIIEDASNRNHLAKLLRFESTKSGSKLASLDQYISRMKPGQKDIYYITGSSKEQLEKSPFLEKLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKIGKDSKDKEIKDSFKELTNWWKDVLSSENVDSVKISNRLDNTPGVVVTSKYGWSANMERIMQSQTLSDANRQSYMRGKRVLEINPKHPIIKELRERVTQNPEEENIKQTARLIYQTALMESGFILNDPKEFATSIYSTIKTTLNVNPDATVEEEDETEEEVEVETKEEIEKVETKEDATEGKFAKEETIEDAVEEQYEESVNDEL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1798	88			11	0.923564
1800	88		11		0.923564
1801	88		11		0.923564
2510	94		5		0.998894
2693	91			5	0.999898
2694	1			94	0.936582
2782		7		92	0.999602
2994	13			80	0.999961

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain