SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23586

Length: 1612 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene23586

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable protein phosphatase 2C 59 n=5 Tax=Magnoliophyta RepID=P2C59_ARATH	-	-	0.0	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Protein phosphatase 2c, putative	-	-	3.682e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	-

Source	Gene names
Sma3	24K23.16; ACRE284; AP3_H09.2; At1g07160; At1g22280; At1g34750; At1g43900; At1g78200; At2g20630; At2g30020; At2g34740; At2g40180; At3g15260; At3g51470; At4g28400; At4g31750; At5g10740; At5g24940; At5g53140; CHLREDRAFT_95558; F10K1.13; F20O9.80; F21H2.4; F2

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR013753	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3		IPR017442	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G31750.1	WIN2 HOPW1-1-interacting 2 chr4:15364657-15367207 REVERSE LENGTH=311	73%
RefSeq	Arabidopsis thaliana	NP_194903.2	putative protein phosphatase 2C 59 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002308720.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWY3

Fln msg:

Fln protein: MSYLNSVFSGRETKFDKAPVSGGGLSENSKFSFGYASSRGKRSSMEDFFVTDTFGVDGQIVGLFGVFDGHGGAQAADYVQQNLFRNLKTHPKFISDTKLAIADAYQQTDSEFLKMENNEHRDAGSTALTATMVGNHLLVANVGDSRAVLCRSGKAVALSRDHKPNQSDERKRIEDAGGFVMWAGTWRVAGVLAVSRAFGDRFLKQYVIAVPEIQEEIINEGVEFFIMASDGLWDVVSNQEAVAIIRFIEDPENAAKRLTDEAFRKGSVDNVTCVVVRFHHS*

Protein Length: 283

Fln nts: AGGAGGTTCGTTGTTATTTTGGAGTGTGTGGGATTTCGGAGGGAATTCATGTGTATTACAAGCTAGATGCTAAAGGAGCAATTATTTGAGCGTTCTTGGCGTGCAGTTCGAGCCATATTTCATGACATTGAGCCATATTTATCTCTCTTCAAATTCTATAAATTCTTTAAGAAATTCCTTCTCCAGCGGTAATTTTGACCTGTTTTGAGATTTTAGCAAGCTATATTGAGGTTTTCAGCAGCCGTCGAAGCGATTCTCAAGTTTTCGGCCGTCACTTTGAATTGCGTCAGGGTTTTAGGCTGTCGTTTTGAGCTAGTTTAACGTTTTCGGCAGTCAATGCAGTGCCGCGTGTAAAATATTTTCTCGGGACCTTCGTTCGGTGCTTTTTGATCGACTTACTGCAAATTCTACGAAAGTACGTGGGCAGCAAATTCGTTTTATGAGAATTCAGCATAAGCTTACCAAGATTGGAATGGTCTAAGAGCTGCAATAAGAAAATCATTCAAGGGAAGGATA_-_ATGAGCTATCTAAATTCTGTATTTTCCGGAAGGGAGACAAAATTCGACAAGGCCCCTGTCAGCGGTGGAGGCCTGAGTGAGAATAGCAAGTTCAGCTTTGGATATGCAAGTTCACGAGGGAAAAGATCTTCAATGGAGGACTTCTTTGTGACTGATACTTTTGGAGTTGATGGTCAAATAGTTGGCTTGTTTGGGGTATTTGATGGCCATGGTGGTGCTCAAGCAGCAGATTATGTACAACAGAACCTTTTTCGTAATTTGAAGACCCATCCTAAATTTATCAGTGACACAAAGCTAGCTATAGCTGACGCTTACCAACAAACAGACTCAGAGTTTCTTAAGATGGAAAATAATGAGCATAGGGATGCTGGGTCAACTGCATTAACTGCTACTATGGTTGGAAACCATTTGTTGGTAGCTAATGTTGGTGATTCTCGAGCTGTTCTTTGCAGGTCTGGAAAAGCTGTTGCTCTTTCGAGAGATCATAAACCTAATCAAAGTGATGAGCGAAAGCGAATCGAAGATGCTGGAGGATTTGTCATGTGGGCTGGCACATGGCGCGTTGCGGGTGTACTTGCTGTCTCACGGGCATTTGGGGACAGGTTTTTGAAGCAGTATGTTATAGCTGTACCAGAAATTCAGGAAGAGATCATTAATGAGGGTGTTGAATTTTTCATCATGGCAAGTGACGGATTATGGGATGTCGTTTCTAATCAGGAAGCTGTTGCTATCATTCGGTTTATTGAGGATCCAGAAAATGCTGCAAAAAGACTCACAGATGAAGCATTTCGAAAAGGCAGTGTAGATAATGTCACTTGTGTTGTTGTACGCTTTCATCACAGTTGA___TAGAAGCATTCTTTCATTGTTTCTCCAGAGTGCTATTGCTGTCTATAGTTGTACCAGTGCTTAAATAATGGATCGGCACATCTGTGCACATGCCTGACATTCTTTTGTATATGTCTTGATTAATTTTGATGGCCCACCATTTTATCTGGGCTAGTTATTATCGATTATGTCATTAGTTATATTAATGCATGGAATTTTTTGTAATGCCAGTTTTTATATTAATGCATATATGATAGAGAATTTTCATCGC

Fln Alignment:

Contig23586___MSYLNSVFSGRETKFDKAPVSGGGLSENSKFSFGYASSRGKRSSMEDFFVTDTFGVDGQIVGLFGVFDGHGGAQAADYVQQNLFRNLKTHPKFISDTKLAIADAYQQTDSEFLKMENNEHRDAGSTALTATMVGNHLLVANVGDSRAVLCRSGKAVALSRDHKPNQSDERKRIEDAGGFVMWAGTWRVAGVLAVSRAFGDRFLKQYVIAVPEIQEEIINEGVEFFIMASDGLWDVVSNQEAVAIIRFIEDPENAAKRLTDEAFRKGSVDNVTCVVVRFHH
A9NWY3_______________MSYLSSIFSSRDPQCVSIPVSGGGVSQNQKFSYGYASSPGKRSSMEDFFDTQICEVDGQIVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYRKGSADNITCVVVRFSH

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
91	33	66			1.0
123		40		60	1.0
134	10	90			0.90298
173	85		14		0.993533
233		16		83	0.994512
248	50		50		1.0
282		16		83	0.994512
302	16		83		0.994512
329	20		80		0.995493
332	80		20		0.995493
605	83		16		0.994512
826		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain