SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23566

Length: 1539 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene23566 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoglycerate mutase, putative n=1 Tax=Ricinus communis RepID=B9RF09_RICCO	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Phosphoglycerate mutase, putative	-	-	2.65e-07	-

Source	Gene names
Sma3	At1g08940; At3g05170; CHLREDRAFT_123133; F7G19.18; GSVIVT00002561001; GSVIVT00006078001; MICPUCDRAFT_13410; MICPUCDRAFT_16376; MICPUN_56539; MICPUN_99001; MtrDRAFT_AC172101g4v1; OJ1264_A04.1; OJ1489_G03.9; OSJNBa0004I20.1; OSTLU_6517; Os05g0141700; Os06g0

Source	GOs	Term	Type	e value	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	0.0	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G05170.1	Phosphoglycerate mutase family protein chr3:1466738-1468219 FORWARD LENGTH=316	62%
RefSeq	Arabidopsis thaliana	NP_187168.1	phosphoglycerate mutase-like protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002328548.1	predicted protein, partial [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAG0

Fln msg: your sequence is longer than subject: 316 - 88

Fln protein: MAEEEFVRKLPRRIILVRHGESEGNLDDSMYTRTPDHQIGLTPEGMKQAEECGRKIRRIIEQGNGESVAAPDWRVYFYVSPYQRTLCTLKGIGRAFQREHIIGVREEVRLREQDFGNFQEEQRMKIIKQTRERFGRFFYRFPEGESAADVFDRVSSFLESLWRDIGMHRIRNNCDNGSSELNLIIVSHGLTSRVFLMKWFKWTTHQFELLNNPHNCDIRVMQLGSGGEYSLAFHHSKEELDEWGLSAEMIADQESRKKGNRGNRGQWNGHCPWFCSQFFDHFAPDAVKEEQESTCPNNGPTCSSSSSRILDSCSP*

Protein Length: 317

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTGGTTTTCTCTTAACGCTCGGACGCTTCTTGGCTGAAGTTACGGAGATTTTCTGGCACCTGGCAAGATTCTATTGCGACATCAAGAGTAGGAATATTACGTTTGCTATCGATTTCGTATTCGTCAGATTTGGGGAAAAGGCCTAAGACGCCTGCTATCAATTTATTTTTCTCAGATTTAGGTTTTGCTGGGGCGAAGGAGCGGAATATTTGCACTGTGTTTGAAGGAGGAGGAGGATTTAAGAGCACATTA_-_ATGGCGGAAGAGGAATTTGTGCGAAAACTTCCTCGGAGGATAATCCTGGTGCGCCATGGGGAAAGCGAGGGAAACCTGGACGATTCAATGTACACGCGCACTCCGGATCACCAGATCGGTTTGACACCCGAGGGGATGAAGCAGGCGGAAGAATGTGGGAGAAAGATTCGAAGAATAATAGAGCAGGGGAACGGAGAATCAGTCGCAGCACCAGATTGGAGGGTTTATTTCTATGTCTCCCCTTACCAGAGAACTCTGTGTACTCTGAAGGGAATCGGCAGGGCATTTCAAAGGGAGCACATTATTGGGGTGCGGGAAGAGGTTCGTCTCAGAGAACAGGACTTCGGCAATTTTCAAGAAGAGCAGCGGATGAAGATCATTAAGCAGACCAGAGAAAGATTCGGCCGCTTTTTCTACCGATTTCCAGAGGGCGAATCCGCTGCCGATGTCTTTGACCGTGTCTCAAGTTTTCTGGAATCTTTATGGAGAGACATCGGCATGCACAGGATTAGGAACAACTGCGATAATGGCAGCAGTGAGCTGAACCTGATTATTGTGTCGCATGGATTGACATCCAGAGTATTTCTGATGAAATGGTTCAAGTGGACTACACATCAGTTCGAGCTTCTGAACAACCCTCACAACTGTGACATAAGAGTAATGCAGCTTGGATCTGGCGGTGAGTACAGTCTCGCTTTTCATCACAGTAAGGAGGAGCTTGATGAATGGGGTCTGTCGGCGGAGATGATTGCAGACCAGGAATCGCGAAAGAAAGGCAACAGAGGCAACAGAGGGCAGTGGAATGGGCATTGTCCTTGGTTCTGTTCTCAATTCTTCGACCATTTTGCCCCTGATGCTGTTAAAGAGGAGCAGGAATCGACATGCCCTAATAATGGCCCAACCTGTTCATCTTCCTCCTCCAGGATTCTTGACAGCTGCAGCCCATAA___AGGTTTGACAGCCTGAATTGGTCAAAGCCCATAACACATCTTTGTGACACACTTGCACATGGACAACTTTAGCTCTTTGCTTCTAGATATTCATTCTAACATCAAGTTCTAACCAAGTTGAGGATAAGATTCGCATCACAAGTTACAGAAGATTTACAGATATGGCTTGATATGGATGATGGTTTATATATTTTTCACTATAATGGAAAGTTGGAAAGTTAATGGTACATTTGTATTTTATTGCGTCTAAGCATCCTGGAATTGATATGTTAATTGCTTTTATAGAAATTGTTTGGAATAAAAATTTGTTGTG

Fln Alignment:

Contig23566___EEQRMKIIKQTRERFGRFFYRFPEGESAADVFDRVSSFLESLWRDIGMHRIRNNCDNGSSEL
D5AAG0_______________KEERMKIIKQTRERFGRFFYRFPEGESSADI------SRESLWREIDMNRTRINRDNGSSDM

SNPs (tot: 62)

Position	A %	C %	G %	T %	Probability
139	75	25			1.0
182	33		66		1.0
190		11		88	0.923564
196	66		33		1.0
230	60		30		1.0
232	90		10		0.90298
235	10	90			0.90298
236	90	10			0.90298
252		60		40	1.0
283		40		60	1.0
284	40		60		1.0
303		66	33		1.0
340			66	33	0.997452
352	33		66		0.997452
383		20	80		0.995493
413	80		20		0.995493
456		20		80	0.995493
530	33		66		1.0
565	50	50			1.0
575	50		50		1.0
626	42		57		1.0
647	83			16	0.994512
648	16			83	0.994512
973		12	87		0.992554
1040		83		16	0.994512
1054		87		12	0.992554
1094	71			14	0.984337
1272			5	83	0.999887
1274	83	16			1.0
1277		5	16	77	1.0
1319		81		18	0.999994
1322	10	90			0.90298
1323	10	90			0.90298
1324		88	11		0.923564
1325	88		11		0.923564
1326			88	11	0.923564
1329	88	11			0.923564
1330	88		11		0.923564
1333		88	11		0.923564
1344	62		12		1.0
1351	85			14	0.993533
1352	85	14			0.993533
1353		14		85	0.993533
1354		14		85	0.993533
1355		14	85		0.993533
1365		16	83		0.994512
1366		16		83	0.994512
1368	16			83	0.994512
1414			80	20	0.995493
1415			20	80	0.995493
1417	80		20		0.995493
1422	20			80	0.995493
1423			20	80	0.995493
1426	20			80	0.995493
1429		80	20		0.995493
1432	20			80	0.995493
1433		20		80	0.995493
1436		20		80	0.995493
1442	75	25			0.996473
1443	75	25			0.996473
1444		25		75	0.996473
1446			75	25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1277	1289	TCC TCC TCC TCC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain