SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23415

Length: 1173 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene23415

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen major allergen No.121 isoform 1 n=1 Tax=Cryptomeria japonica RepID=Q588C0_CRYJA	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G30270.1	MERI5B, MERI-5, XTH24, SEN4 xyloglucan endotransglucosylase/hydrolase 24 chr4:14819445-14820448 REVERSE LENGTH=269	63%
RefSeq	Arabidopsis thaliana	NP_194756.1	xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002318936.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLP1

Fln msg:

Fln protein: MDMGMPLLFLFLLITSSSLLVTVSANFYNDVDITWGNGRGKILDNGQQLQLTLDRTSGCGFQSKNEYLFVKIDMQIKLVPGNSAGTVTAYYLSSQGPKHDEIDYEFLGNLSGDPYIMHTNIFAQGLGNREQQFYLWFDPTLDFHTYSMLWTPNQITFSVDGIPIRVFKNRETELGKIDSNYHYPKNQAMRMYSSLWNADDWATRGGLVKTDWTKAPFVASFSNFSAATSSSNFAGEEALDSNQEQKLQWVRKNYMIYDYCSDTKRFPQGLPAECK*

Protein Length: 277

Fln nts: TATTCGTTCCGCAGCGATTTCAGCCTCCTGGATGTTTAGTGATTTTACTCATTCGTTGCACACTCTTTCATTGCGCACGTCCATCTCCTGCTATTCTATTCCTTTCTTTTCCTTTCATCCCCTCCCTGCAATAATCTGCTCTTGGATCTCAAATTCAAGATCCTCTATTTCTATTAATCCATAATT_-_ATGGACATGGGCATGCCCCTCCTCTTTCTTTTCTTATTAATAACCTCGTCGAGTCTTCTTGTAACTGTTTCTGCAAATTTCTACAACGATGTAGACATCACATGGGGCAATGGTCGTGGTAAAATCCTTGACAATGGCCAACAATTACAGCTTACTCTGGATCGCACTTCAGGTTGTGGGTTTCAATCTAAGAATGAATATCTGTTTGTTAAAATTGATATGCAAATCAAGTTGGTACCTGGGAACTCTGCCGGCACAGTTACTGCCTATTATCTGTCGTCTCAAGGTCCCAAGCACGACGAAATAGACTATGAATTTCTAGGCAACCTGTCTGGAGATCCCTATATTATGCACACCAACATCTTCGCTCAAGGCCTTGGCAATCGTGAACAGCAATTCTACTTGTGGTTCGACCCAACCCTCGATTTCCACACTTACTCCATGCTCTGGACACCAAATCAAATTACATTTTCTGTGGACGGGATTCCTATTCGTGTGTTTAAAAACAGGGAGACAGAGTTGGGTAAAATAGATAGCAATTATCATTATCCGAAGAACCAAGCAATGAGGATGTACTCCAGCCTTTGGAACGCAGATGATTGGGCAACCAGAGGTGGCCTGGTCAAGACAGACTGGACTAAAGCCCCCTTTGTTGCATCCTTCAGCAACTTCAGTGCCGCTACTTCTTCTTCTAACTTCGCCGGAGAGGAGGCTTTGGACTCGAACCAAGAGCAGAAACTCCAGTGGGTGCGAAAAAACTATATGATCTATGATTACTGTTCAGACACAAAGAGGTTCCCCCAGGGGCTACCGGCGGAATGCAAATGA___GCACTCTCGACTCAACTCCTCGTCTAATTGATGAATTCTAGATGCCCTGCCCTTACAACCATTCTTTCTTCCTTATATTCTTTACTATGGCATTCATTCTGTGCCCGTTTTCCGGTGCATATAATAGTGCATAACAATATGTAATAATCCAGAAGATTG

Fln Alignment:

Contig23415___ANFYNDVDITWGNGRGKILDNGQQLQLTLDRTSGCGFQSKNEYLFVKIDMQIKLVPGNSAGTVTAYYLSSQGPKHDEIDYEFLGNLSGDPYIMHTNIFAQGLGNREQQFYLWFDPTLDFHTYSMLWTPNQITFSVDGIPIRVFKNRETELGKIDSNYHYPKNQAMRMYSSLWNADDWATRGGLVKTDWTKAPXXXXXXXXXXXXXXXXXXGEEALDSNQEQKLQWVRKNYMIYDYCSDTKRFPQGLPAECK
A9NLP1_______________ANFYSDFDITWGDDRAKILDNGQQLQLTLDRTSGCGIQSKQEYLFAKIDMQIKLIPGNSAGTVTTYYLSSQGPKHDEIDFEFLGNLSGDPYVMHTNVFAQGLGNREQQFYLWFDPTLDFHTYSVLWTPNQIIFSVDGTPVRVFKNRETELGKVDTNYHYPKSQAMRIYSTLWNADDWATRGGLVKTDWTKSPFAASFRNFNAVTSSSNSTAEEALDSNQERSLQWVQKNYMIYDYCADTKRFPQGLPPECK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
744	66		33		0.997452
778		66		33	0.997452
887			66	33	0.997452
898	33		66		0.997452
943	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain