SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23404

Length: 2929 nt

UniGene Fasta

>sp_v3.0_unigene23404
CATTCGTTTTCTTGCCTGTCGTTCATTCATTCTGTTGTTCAAGTCATGGAGGAACCATCGACCTCCTCGCAGATCACCCATGTGGGAGAGCCCCAAGTTCAAACCCCACCCCGAAATCCTTCCCTCAATCCTCAAGCTTTCTCCACACCCAGTTCTGCAAGATCTCAATTGGGTCATGATGCTCCAAAGCCCAATACCCCGCTTACTTATCAGAAGAGAAAGAGGAAAAAGATCACGAACAACATCGATATCAAACAGGAGGCAACAGAGCCCATTGCCATTGCAGAACCCATTATTAACAATAATTTGGGAGACGTCCCATCTCATAGCAGCGGCAGAGGAAGGAGGAAGAAAAACATAATTATTAATAACAGCAGCACAGACAATTCTGGCAACAAAGAGGCCATGGTTGCCCATTCAGTGGGTTTTCCAGTTGATTCACTGACTGAAGAAGAGATCGAATCCAGTGTGGTTTCAACAGTGGGGGGAGCCGAGCAGGCCAACTATATTGTCATCAGGAACCATATTCTAGGTCGCTGGAGAGACAATGTGAATGCGTATCTAAGTAAGGAGCAGGTCATGAGTTCCATCCCCATAAAGAACAAGAGCCTGGTAAGTTCTGCATACAATTTCCTTTTAACGCATGGGTATATTAATTTTGGGGTTGCTCCTGCAATCAAATCTGTGATTCCTATTCAGGCCACCAAGGGCAATGTAGTGATTATAGGAGCTGGTTTGGCAGGGTTGGCCGCAGCCCGGCAACTGTTGTCATCTGGCTTCAAGGTGATCATAGTGGAGGGCAGGAAGAGGCCTGGTGGGAGGGTTTATACTAAGAGGATGGAAATGGGGAATATTGCTGCCGAAGCGGATTTAGGGGGAAGTGTTCTGACAGGAATTCATGGAAACCCACTTGGTGTGTTGGCCAGGCAACTTTCATACTCACTTCATAAGGTGAGGGATAAGTGCCCTCTGTATCAGCCAGATGGGCAGCCTGTCAATATAGAGGTGGATGCGAAGGTTGAAGTGGCATTCAATAAGTTGCTAGATAAGGCAGGTCAACTGAGACAATTGATGGGTGAGGTTGCAGTGGATATTTCCCTGGGGACAGCTTTGGAGACTTTTAGAAAGGTGTACGGCGTGGCGGAGGAAGTAGATGAGGATAGGCTTTTTAATTGGCATCTCGCCAATTTGGAATATGCCAATGCTGGACTGCTCATGAAGCTGTCTCTTGCATTTTGGGATCAAGATGACCCCTATGAAATGGGAGGGGATCATTGTTTTTTGCCTGGAGGTAACGGTAGGTTGATCCAGGCTTTGACAGAGAATCTGTCAATTTATTATGAGAAAACTGTACAGACGATACGGTATGGGAGTGATGGGGTGCAAGTATTGGCTGGAACTCAGGTGTTTCAAGGGGATATGGTCCTGTGTACTGTTCCACTTGGGGTGTTGAAGAGTAACTCAATCAGGTTTATTCCTGAATTGCCTCAAAGGAAGATTGATGCAATAAAGAGATTAGGGTTTGGATTGCTAAACAAGGTTGCTATGCTTTTCACCCATGTGTTTTGGGGTGCAGAGCTTGACACATTCGGGCATCTGTCTGAAGACACCAGTCGCCGGGGTGAGTTTTTTCTGTTTTATAGCTATGCCACTGTGTCTGGAGGACCACTTTTACTTGCTCTTGTGGCGGGAGATGCTGCAATCAAGTTTGAGAGCATGCATGCTGCTGATGCTGTGGCTCGAGTTATTGAGATTCTTAGAGGAATTTATTGTCCGCGGGGGATTGATGTGCCAGATCCCATTCAGACAGTTTGTACAAGATGGGGCACTGATTCTTTCAGTCTTGGGTCATACTCACATGTTGCAGTTGGGGCTTCAGGTGATGACTATGACATTTTAGCAGAAAGTGTGGGAGAGGGCCGGCTTTTCTTCGCTGGAGAGGCCACTAATCGACGATATCCAGCAACCATGCATGGTGCATTCTTAAGTGGCTTGCGGGAGGCAGCAAATATTTCTAATGCTGCAACTGCGAGGTCAATTCCATCAAAGGTAGAACGGGGCTTATCAAAAGATATTCAGTCTTATGCAGCTCTTCTAGCTGATTTATTTAGACAGCCCGATCTAGAATTTGGTAGTTTTTCTGTTCTCTTTGATCCACAATCGGATGACCCTAAATCAACTGCACTATTGAGGGTCATGGTGGGTGGAACAAGGAGGAAAGCTAATGATAATTCAAAAGTAGATCAACAACATTCAAACAAGCTTATATCTCAACAACTTCAATCACATTTCAATCAACAACAACAACTTCATTTGTACACTTTAATATCACAACAGCAAGCACTTGAACTTAGGGAGGTTAGAGGAGGAGATGAAAATAGATTGAGATACTTGTATGAGAAACTTGGAGTAAAGCTAGTAGGAAGAAGAGGTTTAGGTACTCAGGGAGACTCTCTTGTTGCTTCAATCAAGTCAGCAAGAGCTGCACGCAGGCCTATTTCAGTATCTGCCCCGTTTAAGTTTGGTAACTGAGATAATTTTTCACAAGCAATCTTTGGTGTATTAAAGAGTGTTGAAGATTGCTTTTTTCTGATAAAAAAATCTTTTGGTGTTTAGATTAGAGTGTTTCTTTTCACAGTTGCAATCGTAAACTCGAAGATATCCCTTTAGGCACTCACTAGGCACTCACTCCATACTATCTGATTGAACGTACCCTGGCCTCTCATTCTTCTTACTTTGATATGTAAATAGAAAGATCATTCTTTGTAAGTTTATATTTGCTGGCTACTTCTTATTTGTGGCCAGTCTTTTAACCCAAGCATTACAGGATTTTCCATGGCAGCTGATGTAAATTGAAGAATAATATGAATTAAAACGTGCAGTGCCATGTACTTGATCCGGACATAGTACAGTTTTTTGGTTATAAAAA

Ace file of the UniGene sp_v3.0_unigene23404

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	flowering locus D [Arabidopsis thaliana]	-	-	0.0	62%
FL-Next	sp=Lysine-specific histone demethylase 1 homolog 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%
Sma3	SWIRM domain protein	-	-	1.919e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.-.-.-	-	8.614e-14	-
Sma3	L-amino-acid oxidase.	EC:1.4.3.2	-	9.301e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	9.301e-08	%
Sma3	Cysteine and methionine metabolism	00270	9.301e-08	%
Sma3	Valine, leucine and isoleucine degradation	00280	9.301e-08	%
Sma3	Tyrosine metabolism	00350	9.301e-08	%
Sma3	Phenylalanine metabolism	00360	9.301e-08	%
Sma3	Tryptophan metabolism	00380	9.301e-08	%
Sma3	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	9.301e-08	%
Sma3	Isoquinoline alkaloid biosynthesis	00950	9.301e-08	%
Sma3	Metabolic pathways	01100	9.301e-08	%

Source	Gene names
Sma3	AOX1; At1g62830; At3g10390; At3g13682; B0103C08-B0602B01.13; F13M14.34; F14P13.1; F23N19.19; FLD; GSVIVT00018140001; GSVIVT00027608001; GSVIVT00031221001; HDMA1501; HDMA1502; HDMA1504; HDMA901; HDMA902; HDMA903; LDL1; LDL2; LOC_Os02g51880; LOC_Os04g47270;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-
Sma3	histone deacetylation	GO:0016575	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	histone H3-K4 methylation	GO:0051568	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3		IPR000759	-	-
Sma3	Flavin amine oxidase	IPR001613	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	Aromatic-ring hydroxylase-like	IPR003042	-	-
Sma3	SWIRM domain	IPR007526	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G10390.1	FLD Flavin containing amine oxidoreductase family protein chr3:3229293-3232345 FORWARD LENGTH=884	68%
RefSeq	Arabidopsis thaliana	NP_187650.4	lysine-specific histone demethylase 1 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002315324.1	hypothetical protein POPTRDRAFT_228111, partial [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9CAE3

Fln msg: your sequence is longer than subject: 829 - 789

Fln protein: MEEPSTSSQITHVGEPQVQTPPRNPSLNPQAFSTPSSARSQLGHDAPKPNTPLTYQKRKRKKITNNIDIKQEATEPIAIAEPIINNNLGDVPSHSSGRGRRKKNIIINNSSTDNSGNKEAMVAHSVGFPVDSLTEEEIESSVVSTVGGAEQANYIVIRNHILGRWRDNVNAYLSKEQVMSSIPIKNKSLVSSAYNFLLTHGYINFGVAPAIKSVIPIQATKGNVVIIGAGLAGLAAARQLLSSGFKVIIVEGRKRPGGRVYTKRMEMGNIAAEADLGGSVLTGIHGNPLGVLARQLSYSLHKVRDKCPLYQPDGQPVNIEVDAKVEVAFNKLLDKAGQLRQLMGEVAVDISLGTALETFRKVYGVAEEVDEDRLFNWHLANLEYANAGLLMKLSLAFWDQDDPYEMGGDHCFLPGGNGRLIQALTENLSIYYEKTVQTIRYGSDGVQVLAGTQVFQGDMVLCTVPLGVLKSNSIRFIPELPQRKIDAIKRLGFGLLNKVAMLFTHVFWGAELDTFGHLSEDTSRRGEFFLFYSYATVSGGPLLLALVAGDAAIKFESMHAADAVARVIEILRGIYCPRGIDVPDPIQTVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGEGRLFFAGEATNRRYPATMHGAFLSGLREAANISNAATARSIPSKVERGLSKDIQSYAALLADLFRQPDLEFGSFSVLFDPQSDDPKSTALLRVMVGGTRRKANDNSKVDQQHSNKLISQQLQSHFNQQQQLHLYTLISQQQALELREVRGGDENRLRYLYEKLGVKLVGRRGLGTQGDSLVASIKSARAARRPISVSAPFKFGN*

Protein Length: 830

Fln nts: CATTCGTTTTCTTGCCTGTCGTTCATTCATTCTGTTGTTCAAGTC_-_ATGGAGGAACCATCGACCTCCTCGCAGATCACCCATGTGGGAGAGCCCCAAGTTCAAACCCCACCCCGAAATCCTTCCCTCAATCCTCAAGCTTTCTCCACACCCAGTTCTGCAAGATCTCAATTGGGTCATGATGCTCCAAAGCCCAATACCCCGCTTACTTATCAGAAGAGAAAGAGGAAAAAGATCACGAACAACATCGATATCAAACAGGAGGCAACAGAGCCCATTGCCATTGCAGAACCCATTATTAACAATAATTTGGGAGACGTCCCATCTCATAGCAGCGGCAGAGGAAGGAGGAAGAAAAACATAATTATTAATAACAGCAGCACAGACAATTCTGGCAACAAAGAGGCCATGGTTGCCCATTCAGTGGGTTTTCCAGTTGATTCACTGACTGAAGAAGAGATCGAATCCAGTGTGGTTTCAACAGTGGGGGGAGCCGAGCAGGCCAACTATATTGTCATCAGGAACCATATTCTAGGTCGCTGGAGAGACAATGTGAATGCGTATCTAAGTAAGGAGCAGGTCATGAGTTCCATCCCCATAAAGAACAAGAGCCTGGTAAGTTCTGCATACAATTTCCTTTTAACGCATGGGTATATTAATTTTGGGGTTGCTCCTGCAATCAAATCTGTGATTCCTATTCAGGCCACCAAGGGCAATGTAGTGATTATAGGAGCTGGTTTGGCAGGGTTGGCCGCAGCCCGGCAACTGTTGTCATCTGGCTTCAAGGTGATCATAGTGGAGGGCAGGAAGAGGCCTGGTGGGAGGGTTTATACTAAGAGGATGGAAATGGGGAATATTGCTGCCGAAGCGGATTTAGGGGGAAGTGTTCTGACAGGAATTCATGGAAACCCACTTGGTGTGTTGGCCAGGCAACTTTCATACTCACTTCATAAGGTGAGGGATAAGTGCCCTCTGTATCAGCCAGATGGGCAGCCTGTCAATATAGAGGTGGATGCGAAGGTTGAAGTGGCATTCAATAAGTTGCTAGATAAGGCAGGTCAACTGAGACAATTGATGGGTGAGGTTGCAGTGGATATTTCCCTGGGGACAGCTTTGGAGACTTTTAGAAAGGTGTACGGCGTGGCGGAGGAAGTAGATGAGGATAGGCTTTTTAATTGGCATCTCGCCAATTTGGAATATGCCAATGCTGGACTGCTCATGAAGCTGTCTCTTGCATTTTGGGATCAAGATGACCCCTATGAAATGGGAGGGGATCATTGTTTTTTGCCTGGAGGTAACGGTAGGTTGATCCAGGCTTTGACAGAGAATCTGTCAATTTATTATGAGAAAACTGTACAGACGATACGGTATGGGAGTGATGGGGTGCAAGTATTGGCTGGAACTCAGGTGTTTCAAGGGGATATGGTCCTGTGTACTGTTCCACTTGGGGTGTTGAAGAGTAACTCAATCAGGTTTATTCCTGAATTGCCTCAAAGGAAGATTGATGCAATAAAGAGATTAGGGTTTGGATTGCTAAACAAGGTTGCTATGCTTTTCACCCATGTGTTTTGGGGTGCAGAGCTTGACACATTCGGGCATCTGTCTGAAGACACCAGTCGCCGGGGTGAGTTTTTTCTGTTTTATAGCTATGCCACTGTGTCTGGAGGACCACTTTTACTTGCTCTTGTGGCGGGAGATGCTGCAATCAAGTTTGAGAGCATGCATGCTGCTGATGCTGTGGCTCGAGTTATTGAGATTCTTAGAGGAATTTATTGTCCGCGGGGGATTGATGTGCCAGATCCCATTCAGACAGTTTGTACAAGATGGGGCACTGATTCTTTCAGTCTTGGGTCATACTCACATGTTGCAGTTGGGGCTTCAGGTGATGACTATGACATTTTAGCAGAAAGTGTGGGAGAGGGCCGGCTTTTCTTCGCTGGAGAGGCCACTAATCGACGATATCCAGCAACCATGCATGGTGCATTCTTAAGTGGCTTGCGGGAGGCAGCAAATATTTCTAATGCTGCAACTGCGAGGTCAATTCCATCAAAGGTAGAACGGGGCTTATCAAAAGATATTCAGTCTTATGCAGCTCTTCTAGCTGATTTATTTAGACAGCCCGATCTAGAATTTGGTAGTTTTTCTGTTCTCTTTGATCCACAATCGGATGACCCTAAATCAACTGCACTATTGAGGGTCATGGTGGGTGGAACAAGGAGGAAAGCTAATGATAATTCAAAAGTAGATCAACAACATTCAAACAAGCTTATATCTCAACAACTTCAATCACATTTCAATCAACAACAACAACTTCATTTGTACACTTTAATATCACAACAGCAAGCACTTGAACTTAGGGAGGTTAGAGGAGGAGATGAAAATAGATTGAGATACTTGTATGAGAAACTTGGAGTAAAGCTAGTAGGAAGAAGAGGTTTAGGTACTCAGGGAGACTCTCTTGTTGCTTCAATCAAGTCAGCAAGAGCTGCACGCAGGCCTATTTCAGTATCTGCCCCGTTTAAGTTTGGTAACTGA___GATAATTTTTCACAAGCAATCTTTGGTGTATTAAAGAGTGTTGAAGATTGCTTTTTTCTGATAAAAAAATCTTTTGGTGTTTAGATTAGAGTGTTTCTTTTCACAGTTGCAATCGTAAACTCGAAGATATCCCTTTAGGCACTCACTAGGCACTCACTCCATACTATCTGATTGAACGTACCCTGGCCTCTCATTCTTCTTACTTTGATATGTAAATAGAAAGATCATTCTTTGTAAGTTTATATTTGCTGGCTACTTCTTATTTGTGGCCAGTCTTTTAACCCAAGCATTACAGGATTTTCCATGGCAGCTGATGTAAATTGAAGAATAATATGAATTAAAACGTGCAGTGCCATGTACTTGATCCGGACATAGTACAGTTTTTTGGTTATAAAAA

Fln Alignment:

Contig23404___EAMVAHSVGFPVDXXXXXXXXXXXXXXXGGAEQANYIVIRNHILGRWRDNVNAYLSKEQVMSSIPIKNKSLVSSAYNFLLTHGYINFGVAPAIKSVIPIQATKGNVVIIXXXXXXXXXXXXXXXXXFKVIIVEGRKRPGGRVYTKRMEMGNIAAEADLGGSVLTGIHGNPLGVLARQLSYSLHKVRDKCPLYQPDGQPVNIEVDAKVEVAFNKLLDKAGQLRQLMGEVAVDISLGTALETFRKVYGVAEEVDEDRLFNWHLANLEYANAGLLMKLSLAFWDQDDPYEMGGDHCFLPGGNGRLIQALTENLSIYYEKTVQTIRYGSDGVQVLAGTQVFQGDMVLCTVPLGVLKSNSIRFIPELPQRKIDAIKRLGFGLLNKVAMLFTHVFWGAELDTFGHLSEDTSRRGEFFLFYSYATVSGGPLLLALVAGDAAIKFESMHAADAVARVIEILRGIYCPRGIDVPDPIQTVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGEGRLFFAGEATNRRYPATMHGAFLSGLREAANISNAATARSIPSKVERGLSKDIQSYAALLADLFRQPDLEFGSFSVLFDPQSDDPKSTALLRVMVGGTRRKANDNSKVDQQHSNKLIXXXXXXXXXXXXXXXXYTLISQQQALELREVRGGDENRLRYLYEXXXXXXXXXXXXXTQGDSLVASIKSARAARR-PISVSAPFKFG
Q9CAE3_______________EALLALTAGFPADSLTEEEIEFGVVPIVGGIEQVNYILIRNHIISKWRENISSWVTKEMFLNSIPKHCSSLLDSAYNYLVTHGYINFGIAQAIKDKFPAQSSKSSVIIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLYKVRDKCPLYRVDGKPVDPDVDIKVEVAFNQLLDKASKLRQLMGDVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENVPILYEKTVQTIRYGSNGVKVTAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGALLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKARGIRKRIDRNPSRNAHSCAILLADLFRDPDLEFGSFCIIFSRRNPDPKSPAILRVTL-SEPRKRNEDPKAD-QHSNKILFQQLQSHFNQQQQIQVYTLLTRQQALDLREVRGGDEKRLYYLCETLGVKLVGRKGLGVGADSVIASIKAERTGRKLPSSSTSGTKSG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
114	66	33			0.997452
491	25		75		0.996473
2300	80		20		0.995493
2301	60		20	20	0.99255
2302		80	20		0.995493
2303	60		20	20	0.99255
2304	60		40		1.0
2305		80		20	0.995493
2306	80	20			0.995493
2309	80			20	0.995493
2310	80	20			0.995493
2311	20	80			0.995493
2371	20		80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
2296	2308	CAA CAA CAA CAA C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain