SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23380

Length: 1053 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene23380 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pinoresinol-lariciresinol reductase TH2 n=2 Tax=Tsuga heterophylla RepID=Q9M520_TSUHE	-	-	0.0	70%
FL-Next	tr=Pinoresinol-lariciresinol reductase TH2; Tsuga heterophylla (Western hemlock) (Abies heterophylla).	-	-	0.0	70%
Sma3	Pinoresinol-lariciresinol reductase	-	-	6.874e-29	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxidoreductases, Acting on the CH-CH group of donors, With NAD(+) or NADP(+) as acceptor.	EC:1.3.1.-	-	5.006e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid biosynthesis	00061		5.006e-14	%
Sma3	Phenylalanine metabolism	00360		5.006e-14	%
Sma3	Chlorocyclohexane and chlorobenzene degradation	00361		5.006e-14	%
Sma3	Fluorobenzoate degradation	00364		5.006e-14	%
Sma3	Tryptophan metabolism	00380		5.006e-14	%
Sma3	Xylene degradation	00622		5.006e-14	%
Sma3	Toluene degradation	00623		5.006e-14	%
Sma3	Polycyclic aromatic hydrocarbon degradation	00624		5.006e-14	%
Sma3	Propanoate metabolism	00640		5.006e-14	%
Sma3	Isoflavonoid biosynthesis	00943		5.006e-14	%
Sma3	Biosynthesis of unsaturated fatty acids	01040		5.006e-14	%
Sma3	Metabolic pathways	01100		5.006e-14	%
Sma3	2'-hydroxyisoflavone reductase.	EC:1.3.1.45	-	3.938e-33	-

Source	KEGGs	Term	e value	Identity
Sma3	Isoflavonoid biosynthesis	00943	3.938e-33	%
Sma3	Biosynthesis of phenylpropanoids	01061	3.938e-33	%
Sma3	Biosynthesis of secondary metabolites	01110	3.938e-33	%

Source	Gene names
Sma3	A622; A622L; AIS1; AT4g13660; AT4g39230; At1g32100; At1g75280; At1g75290; At1g75300; At1g75300/F22H5_16; At4g13660; At4g39230; BETV6; BETV6.0102; DDCBER1; EGS1; F18A5.50; F22H5.16; F22H5.17; F22H5.18; F3C3.10; GSVIVT00014594001; GSVIVT00017628001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	pinoresinol reductase activity	GO:0010283	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	leucoanthocyanidin reductase activity	GO:0033788	Molecular Function	-
Sma3	2'-hydroxyisoflavone reductase activity	GO:0047526	Molecular Function	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	phenylpropanoid metabolic process	GO:0009698	Biological Process	-
Sma3	lignan biosynthetic process	GO:0009807	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cecropin	IPR000875	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G13660.1	ATPRR2, PRR2 pinoresinol reductase 2 chr4:7946283-7948252 FORWARD LENGTH=317	60%
RefSeq	Arabidopsis thaliana	NP_193102.1	pinoresinol reductase 2 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002326577.1	phenylcoumaran benzylic ether reductase -like protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9M520

Fln msg:

Fln protein: MAEEGKARILIVGGTGYIGRRFVRASLALGHSTYVLSRPEAIGLDIEKLQMLLSFKSAGAHLLQGSFDNHESLVAALKKVDVVICAMAGNHIRSHAILQQLKLVEAIKEAPNIKRFLPSEFGIDPDRMEHAMEPGNVTFIDKREVRRAIEAAEIPYTYVSANCFAGYFVGGLAQLGRVTPPADRVCIYGDGNAKAIWVDEDDVSTYAIRTVDDPRTLNKTLYIRPAANILSQKEVIQIWEKYTGKALEKTYLSSDDFLKIMKERSLAEQIGMTHFYHIFYEGCLSNFEIGDDGKEATELYPDVQYTTVQTYLNRFL*

Protein Length: 318

Fln nts: AAACGGTGGACTGTAACTTATTTTTTAACATCG_-_ATGGCGGAGGAGGGCAAGGCCAGGATTTTGATAGTGGGAGGGACGGGATACATTGGCAGAAGGTTTGTAAGGGCCAGCTTGGCCCTTGGTCATTCTACTTATGTTCTTTCTCGCCCAGAGGCCATTGGCCTTGACATTGAAAAGCTCCAAATGCTCTTGTCCTTCAAAAGTGCCGGAGCCCATCTTTTACAGGGGTCGTTTGATAATCATGAGAGCCTTGTGGCCGCTTTGAAGAAAGTTGATGTTGTGATTTGCGCCATGGCTGGAAACCACATTCGCAGTCACGCAATTCTTCAGCAGCTGAAGCTGGTGGAAGCCATTAAAGAAGCTCCCAACATCAAGAGATTTCTCCCATCTGAATTTGGCATAGATCCGGACAGAATGGAACATGCAATGGAACCAGGAAATGTCACTTTCATTGACAAACGAGAGGTCAGGCGCGCCATCGAAGCAGCGGAGATCCCGTACACTTACGTATCTGCAAACTGCTTTGCAGGGTATTTCGTAGGGGGGTTGGCACAGCTTGGTCGTGTAACACCCCCTGCAGATCGAGTTTGCATCTATGGAGACGGGAATGCTAAAGCTATTTGGGTGGACGAAGATGATGTATCAACTTATGCAATAAGGACCGTGGACGATCCACGCACTTTGAACAAAACCCTCTACATTCGCCCGGCTGCTAACATTCTGTCTCAGAAAGAGGTGATACAGATTTGGGAGAAATACACAGGAAAAGCTTTGGAGAAAACATACCTGTCAAGTGATGACTTCTTGAAGATTATGAAAGAGAGAAGTTTGGCAGAGCAGATTGGTATGACGCATTTTTACCACATATTCTACGAGGGTTGCCTCTCTAATTTTGAGATTGGTGACGATGGAAAAGAAGCGACTGAGCTTTACCCAGATGTCCAATACACTACTGTCCAAACTTACCTCAACCGTTTTTTATAA___AATCCCGTTCGTCTATTTTTTGTGGGAACATTTGATTTCGAATGAAGTAATCATCTTCAAACACCAATT

Fln Alignment:

Contig23380___ARILIVGGTGYIGRRFVRASLALGHSTYVLSRPEAIGLDIEKLQMLLSFKSAGAHLLQGSFDNHESLVAALKKVDVVICAMAGNHIRSHAILQQLKLVEAIKEAPNIKRFLPSEFGIDPDRMEHAMEPGNVTFIDKREVRRAIEAAEIPYTYVSANCFAGYFVGGLAQLGRVTPPADRVCIYGDGNAKAIWVDEDDVSTYAIRTVDDPRTLNKTLYIRPAANILSQKEVIQIWEKYTGKALEKTYLSSDDFLKIMKERSLAEQIGMTHFYHIFYEGCLSNFEIGDDGKEATELYPDVQYTTVQTYLNRFL
Q9M520_______________SRVLIVGGTGYIGRKFVKASLALGHPTFVLSRPE-VGFDIEKVHMLLSFKQAGARLLEGSFEDFQSLVAALKQVDVVISAVAGNHFRN-LILQQLKLVEAIKEARNIKRFLPSEFGMDPDLMEHALEPGNAVFIDKRKVRRAIEAAGIPYTYVSSNIFAGYLAGGLAQIGRLMPPRDEVVIYGDGNVKAVWVDEDDVGIYTLKTIDDPRTLNKTVYIRPLKNILSQKELVAKWEKLSGKFLKKTYISAEDFLAGIEDQPYEHQVGISHFYQMFYSGDLYNFEIGPDGREATMLYPEVQYTTMDSYLKRYL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
254	25		75		0.996473
456		85		14	0.993533
567	33		66		1.0
689	12		87		0.992554
728	90		10		0.90298
848	11		88		0.923564
863		87		12	0.992554
875		12	87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain