SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23344

Length: 3522 nt

UniGene Fasta

>sp_v3.0_unigene23344
AATAAAATAATATTGCCGGGTAGCAAACTCATGAATTAAAGCACACTCAATCACAGAATCCCCTGAAACACAAAATAGAAAAACAAAACCACGTAGTGAAGGGAACTGCGCAGCGTTAGGCTACGCTAAGCTTGACGGTAACCTCTCCTCTCATCGCAGACTGCAGTACGTATATTGCAGTGCAACGCGGCGGCTACAGGAGGTTACTTCTCATAAACCCCCCTCACACTAAACCTCGAACCTCAACGTCCCAAGGACAGGGACTTTAAACCCTAAACCCTGACAACCGACTGCTGCGCCTTTTGTGTATCCACAATTCAATTCAAATCAGCATTTCCAGGTGTAAATCAGAAGACCTACCTTACATTCACAAGTCAGAAAAGAAGGGAAGGAAGCAAACAAGCAATCAATTAGAATGAGGAAGAAGAATAAGAAATCCGAGCCGCCATTACCATTGCTTCCGCCAGAGGTGGGAGAGGACGAGATCGAAGTGTCGGAGGAGGATGTGGAGTTCGTGCAGAAGAATAAGCGATTCGCTGGCTTCCTCAACAGACTGGACACCGACACTATCACCAAACAGGTTGTGGGGCTTGCTGTTGATGATTCCAAAAAGGAGGATGCTCTGGAATCTTATTATGAGCAGAGAGTGAAGAAAAGTTTTTCATCTTCTTTTTCTGCTCGAGAGGCAACCAACAATTCCAGGCTGGAAGTAGACCCTGTGGATGCACTTCCTGTCAAGACCTTGTCAGGACAACTGTATTACAAAACAGCTCCTAGGGTTTTGGGTCCAGTTCAGCATAATGTTGAAGGAACCTTGGTTGAAAGCAATGCAAGTGGAGACATTTGCTTTGGACAAACGAAAGCGAAGCTTACAAAAGTTGAAAGAAGAAAAGAGTTAAAGCAAGCAAAACGGCAGGCCAAGATACAAGCAAAAGCAGAAAGCCAATTCAGCAAAGAAAGCAAAGCACCAAAGTCAGCAGTGCTGGAGGAACTGGAGAAGGACCTTTCTGTAGAAGAATTGTTTTCTCAACGAAAGGCCCGCATAGCAGAGATTGGAACTGGCCTACTCTCTGATCCTGAGAAACATATTTCAACTTTGAAGGAATTAGTAGAGATGTGCAGTGACGAGGACAAGAACATTTCACAACTTGCACTGCTTTCTTCTGTGGCTGTTTTGAAGGACATTATCCCAGGTTACCGGGTGAGGCTTCCCACAGAGAAGGAACTGGAGATGAAAGTTTCTAAAGAAATAAAAAAAATGCGTGATTACGAATCCACCCTTCTAAAGTGTTACCAGACATTTCTACAGAAGCTGATAACTTTAGGAAAGGGTTCTTCCTTGCACCAAATTGCTGTTCGATGTATGTGTATTTTACTGGAAGCAATTCCACACTTTAATTATCGGGACAGCTTGTTAGGTGCAGTTATCCCTCACATGAGCTCCATTGAGGATTTAAACAGGAGACTGAGTTGTGCTGCCATAAGATCAGTGTTTTTGAATGAGGGGAAGCATCGTGGTGAAGCCACAGTAGAGGCTGTTCAATTGATAGCAGATTTTGTAAAGCGCAATCATTGTCGTCTTCATCCTGACACCATTGATGTTTTTTCATCACTTTCCTTTTATGAAGATCTCAGCAGACATAATGAGTCAAAATCAGATGGTAAGAATCGCTATAGACAGAAAAACAAAAATAATGACCTCAAGCCAAGTGGACCAGAAAAGAGTGAGAACAAAGTGAAGAAGCACCAGTTGGCTGCAAGGTTGAGAGAAGAGGTTGAGGAAGATTTTAAAGCAGCCTCTTCAGCTCCAGATTCTTCAGAATGCAGAAGAATGCAGACACAGACCCTTGCTGCTGTGTTTGAGACTTATTTTCGTATTCTGAAATGCAGTTTGGACCCACAGCTAGATAGGCATATCAACCCAACCAATGGTGACCGCATGCATCATGGGTTTGGACTAAGACCACTTCTTGTGCCTTGCTTGGATGGGTTAGGAAAATTTTCGCATTTGATCAATGTTGATTTTATGGGAGATCTGTTGGCACATCTCCAAAAACTTGCAGCTGCAGATGGCACATTGAATACCAGAAGCGGAACTTGTCTTCAATTAATGCTGACAGTTCCTGAACGCCTAAGATGCTGCATTGTGGCATTCAAAATTGTTCGAAGCAACCTTGATGCATTAAATATAGATCTTCAAGAGTTCTTTGTACAATTATATAATTTGCTTCTTGACTGGGAACCTGAAAGGGACAATCACTGCGAAACACTTGCAGAAGCACTGCAAATAATGTTATGCCAGGGAAGACAACATGACATGCAGAGGGCAGCCGCTTTTACAAAACGACTGGCCTCGTTGTCGCTGCATTTTGAATCTGCTGAGGCTATGACTGTGCTGGTGACGCTCAAGAATCTACTGCAAAAGTATGTGAAATGTCGTAATTTATTGGAAAACGATGGTGGAGGTGGCTCAATTGGTGGTACTGTAGCGAGATATCAACCTGAGGCCTCAGACCCTGAGTTAAGTGGAGCTCTTTCTTCAATCTTATGGGAGTTGGCCTTGCTATCAAAGCATTATCATCCAGCTGTTTCTGAATTGGCTGACAATATTGCTAGCATGAGCATGTCTCATAATTCAGCTGTTCTTTCAACTCTTTCTCCACCAGATGCCTTCAGGACCTATTCAACAAAGGAGGGTGCCTTTAGGCCTCCAATCCATCAGGCCAAGCCAACCCGGAAAAGAAAGTCCAATCATGCGAGTGCAGTTTCATTTCTTTCTTCAGAGGAGCAGATTAAGGCTGTTGAAGATACGGATTCAGTTGGAAAAAAGTTTACTACGCATTTTAAGGTGCTTAGAGATATTAAAGAGAATGAAATTCTGAGAAGGGAGCTAAATACTACTTTATCATCCCTAAGGTTGTATGAGCACTATAAAGCTAGAAAGTCAAAGAAATTGAAGAAAGTTACTAGTGGATAGCATTCTTGAAAATCAGATGCTTGGATTTCAATGTTTATCTGGATTGAATATATTGTCCCGCTTTAGCTATATTTTTTAAATATAAAAGTGTTCTTGCATTTTTTGGTTTAAATTATTGGCTAGTAGATGTTAAGCAATATAAATATTGCTTCAGATTGGTATCTAATCAACAAATTCTAGTTCAGGAAGATGCTATTGATGAGAAGGCTACTAAAAAAGTGCGGGGTGTATATTGTCTAGTTTTAAACTTCCCATTATCGAAGTGGTGACTATTTCTGATTCTATATTAAGAGAATCCATTCTGAACCACTGTTATTGCTATTTAAATAGCGATAGATTCTAAATTCATGGGTAATACACGATCTCTTACATTTATGTTCGAACTGTATTGGAAACAATTACCAACCAAAGTTATGTGAACGAGTTAAATAGAGAAAAGAATCACATTAACATGTCTATTTCCATTACGTTTCTATTTCAAAACTTAATGGAACGACTAAGGTATCGCTATTGGATTTAAACTATATTGCAAAAGAGAATTTTGA

Ace file of the UniGene sp_v3.0_unigene23344

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleolar complex-associated protein domain-containing protein [Arabidopsis thaliana] gb\|AEE36209.1\| nucleolar complex-associated protein domain-containing protein [Arabidopsis thaliana]	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	51%

Source	Gene names
Sma3	At1g79140; At1g79150; GSVIVT00035711001; Os06g0498500; OsI_23086; OsJ_21447; P0596H06.4; PHYPADRAFT_129150; POPTRDRAFT_650939; RCOM_1575060; VITISV_000380; YUP8H12R.24;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	CCAAT-binding factor	IPR005612	-	-
Sma3	Nucleolar complex-associated	IPR011501	-	-
Sma3	Nucleolar complex-associated protein 3	IPR016903	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G79150.1	binding chr1:29772716-29777874 REVERSE LENGTH=830	46%
RefSeq	Arabidopsis thaliana	NP_178036.2	nucleolar complex-associated protein domain-containing protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002306407.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6H9Y0

Fln msg:

Fln protein: MRKKNKKSEPPLPLLPPEVGEDEIEVSEEDVEFVQKNKRFAGFLNRLDTDTITKQVVGLAVDDSKKEDALESYYEQRVKKSFSSSFSAREATNNSRLEVDPVDALPVKTLSGQLYYKTAPRVLGPVQHNVEGTLVESNASGDICFGQTKAKLTKVERRKELKQAKRQAKIQAKAESQFSKESKAPKSAVLEELEKDLSVEELFSQRKARIAEIGTGLLSDPEKHISTLKELVEMCSDEDKNISQLALLSSVAVLKDIIPGYRVRLPTEKELEMKVSKEIKKMRDYESTLLKCYQTFLQKLITLGKGSSLHQIAVRCMCILLEAIPHFNYRDSLLGAVIPHMSSIEDLNRRLSCAAIRSVFLNEGKHRGEATVEAVQLIADFVKRNHCRLHPDTIDVFSSLSFYEDLSRHNESKSDGKNRYRQKNKNNDLKPSGPEKSENKVKKHQLAARLREEVEEDFKAASSAPDSSECRRMQTQTLAAVFETYFRILKCSLDPQLDRHINPTNGDRMHHGFGLRPLLVPCLDGLGKFSHLINVDFMGDLLAHLQKLAAADGTLNTRSGTCLQLMLTVPERLRCCIVAFKIVRSNLDALNIDLQEFFVQLYNLLLDWEPERDNHCETLAEALQIMLCQGRQHDMQRAAAFTKRLASLSLHFESAEAMTVLVTLKNLLQKYVKCRNLLENDGGGGSIGGTVARYQPEASDPELSGALSSILWELALLSKHYHPAVSELADNIASMSMSHNSAVLSTLSPPDAFRTYSTKEGAFRPPIHQAKPTRKRKSNHASAVSFLSSEEQIKAVEDTDSVGKKFTTHFKVLRDIKENEILRRELNTTLSSLRLYEHYKARKSKKLKKVTSG*

Protein Length: 855

Fln nts: AATAAAATAATATTGCCGGGTAGCAAACTCATGAATTAAAGCACACTCAATCACAGAATCCCCTGAAACACAAAATAGAAAAACAAAACCACGTAGTGAAGGGAACTGCGCAGCGTTAGGCTACGCTAAGCTTGACGGTAACCTCTCCTCTCATCGCAGACTGCAGTACGTATATTGCAGTGCAACGCGGCGGCTACAGGAGGTTACTTCTCATAAACCCCCCTCACACTAAACCTCGAACCTCAACGTCCCAAGGACAGGGACTTTAAACCCTAAACCCTGACAACCGACTGCTGCGCCTTTTGTGTATCCACAATTCAATTCAAATCAGCATTTCCAGGTGTAAATCAGAAGACCTACCTTACATTCACAAGTCAGAAAAGAAGGGAAGGAAGCAAACAAGCAATCAATTAGA_-_ATGAGGAAGAAGAATAAGAAATCCGAGCCGCCATTACCATTGCTTCCGCCAGAGGTGGGAGAGGACGAGATCGAAGTGTCGGAGGAGGATGTGGAGTTCGTGCAGAAGAATAAGCGATTCGCTGGCTTCCTCAACAGACTGGACACCGACACTATCACCAAACAGGTTGTGGGGCTTGCTGTTGATGATTCCAAAAAGGAGGATGCTCTGGAATCTTATTATGAGCAGAGAGTGAAGAAAAGTTTTTCATCTTCTTTTTCTGCTCGAGAGGCAACCAACAATTCCAGGCTGGAAGTAGACCCTGTGGATGCACTTCCTGTCAAGACCTTGTCAGGACAACTGTATTACAAAACAGCTCCTAGGGTTTTGGGTCCAGTTCAGCATAATGTTGAAGGAACCTTGGTTGAAAGCAATGCAAGTGGAGACATTTGCTTTGGACAAACGAAAGCGAAGCTTACAAAAGTTGAAAGAAGAAAAGAGTTAAAGCAAGCAAAACGGCAGGCCAAGATACAAGCAAAAGCAGAAAGCCAATTCAGCAAAGAAAGCAAAGCACCAAAGTCAGCAGTGCTGGAGGAACTGGAGAAGGACCTTTCTGTAGAAGAATTGTTTTCTCAACGAAAGGCCCGCATAGCAGAGATTGGAACTGGCCTACTCTCTGATCCTGAGAAACATATTTCAACTTTGAAGGAATTAGTAGAGATGTGCAGTGACGAGGACAAGAACATTTCACAACTTGCACTGCTTTCTTCTGTGGCTGTTTTGAAGGACATTATCCCAGGTTACCGGGTGAGGCTTCCCACAGAGAAGGAACTGGAGATGAAAGTTTCTAAAGAAATAAAAAAAATGCGTGATTACGAATCCACCCTTCTAAAGTGTTACCAGACATTTCTACAGAAGCTGATAACTTTAGGAAAGGGTTCTTCCTTGCACCAAATTGCTGTTCGATGTATGTGTATTTTACTGGAAGCAATTCCACACTTTAATTATCGGGACAGCTTGTTAGGTGCAGTTATCCCTCACATGAGCTCCATTGAGGATTTAAACAGGAGACTGAGTTGTGCTGCCATAAGATCAGTGTTTTTGAATGAGGGGAAGCATCGTGGTGAAGCCACAGTAGAGGCTGTTCAATTGATAGCAGATTTTGTAAAGCGCAATCATTGTCGTCTTCATCCTGACACCATTGATGTTTTTTCATCACTTTCCTTTTATGAAGATCTCAGCAGACATAATGAGTCAAAATCAGATGGTAAGAATCGCTATAGACAGAAAAACAAAAATAATGACCTCAAGCCAAGTGGACCAGAAAAGAGTGAGAACAAAGTGAAGAAGCACCAGTTGGCTGCAAGGTTGAGAGAAGAGGTTGAGGAAGATTTTAAAGCAGCCTCTTCAGCTCCAGATTCTTCAGAATGCAGAAGAATGCAGACACAGACCCTTGCTGCTGTGTTTGAGACTTATTTTCGTATTCTGAAATGCAGTTTGGACCCACAGCTAGATAGGCATATCAACCCAACCAATGGTGACCGCATGCATCATGGGTTTGGACTAAGACCACTTCTTGTGCCTTGCTTGGATGGGTTAGGAAAATTTTCGCATTTGATCAATGTTGATTTTATGGGAGATCTGTTGGCACATCTCCAAAAACTTGCAGCTGCAGATGGCACATTGAATACCAGAAGCGGAACTTGTCTTCAATTAATGCTGACAGTTCCTGAACGCCTAAGATGCTGCATTGTGGCATTCAAAATTGTTCGAAGCAACCTTGATGCATTAAATATAGATCTTCAAGAGTTCTTTGTACAATTATATAATTTGCTTCTTGACTGGGAACCTGAAAGGGACAATCACTGCGAAACACTTGCAGAAGCACTGCAAATAATGTTATGCCAGGGAAGACAACATGACATGCAGAGGGCAGCCGCTTTTACAAAACGACTGGCCTCGTTGTCGCTGCATTTTGAATCTGCTGAGGCTATGACTGTGCTGGTGACGCTCAAGAATCTACTGCAAAAGTATGTGAAATGTCGTAATTTATTGGAAAACGATGGTGGAGGTGGCTCAATTGGTGGTACTGTAGCGAGATATCAACCTGAGGCCTCAGACCCTGAGTTAAGTGGAGCTCTTTCTTCAATCTTATGGGAGTTGGCCTTGCTATCAAAGCATTATCATCCAGCTGTTTCTGAATTGGCTGACAATATTGCTAGCATGAGCATGTCTCATAATTCAGCTGTTCTTTCAACTCTTTCTCCACCAGATGCCTTCAGGACCTATTCAACAAAGGAGGGTGCCTTTAGGCCTCCAATCCATCAGGCCAAGCCAACCCGGAAAAGAAAGTCCAATCATGCGAGTGCAGTTTCATTTCTTTCTTCAGAGGAGCAGATTAAGGCTGTTGAAGATACGGATTCAGTTGGAAAAAAGTTTACTACGCATTTTAAGGTGCTTAGAGATATTAAAGAGAATGAAATTCTGAGAAGGGAGCTAAATACTACTTTATCATCCCTAAGGTTGTATGAGCACTATAAAGCTAGAAAGTCAAAGAAATTGAAGAAAGTTACTAGTGGATAG___CATTCTTGAAAATCAGATGCTTGGATTTCAATGTTTATCTGGATTGAATATATTGTCCCGCTTTAGCTATATTTTTTAAATATAAAAGTGTTCTTGCATTTTTTGGTTTAAATTATTGGCTAGTAGATGTTAAGCAATATAAATATTGCTTCAGATTGGTATCTAATCAACAAATTCTAGTTCAGGAAGATGCTATTGATGAGAAGGCTACTAAAAAAGTGCGGGGTGTATATTGTCTAGTTTTAAACTTCCCATTATCGAAGTGGTGACTATTTCTGATTCTATATTAAGAGAATCCATTCTGAACCACTGTTATTGCTATTTAAATAGCGATAGATTCTAAATTCATGGGTAATACACGATCTCTTACATTTATGTTCGAACTGTATTGGAAACAATTACCAACCAAAGTTATGTGAACGAGTTAAATAGAGAAAAGAATCACATTAACATGTCTATTTCCATTACGTTTCTATTTCAAAACTTAATGGAACGACTAAGGTATCGCTATTGGATTTAAACTATATTGCAAAAGAGAATTTTGA

Fln Alignment:

Contig23344___KNKRFAGFLNRLDTDTITKQVVGLAVDDSKKEDALESYYEQRVKKSFSSSFSAREATNNSRLEVDPVDALPVKTLSGQLYYKTAPRVLGPVQHNVEGTLVESNASGDICFGQTKAKLTKVERRKELXXXXXXXXXXXXXESQFSKESKAPKSAVLEELEKDLSVEELFSQRKARIAEIGTGLLSDPEKHISTLKELVEMCSDEDKNISQXXXXXXXXXXKDIIPGYRVRLPTEKELEMKVSKEIKKMRDYESTLLKCYQTFLQKLITLGKGSSLHQIAVRCMCILLEAIPHFNYRDSLLGAVIPHMSSIEDLNRRLSCAAIRSVFLNEGKHRGEATVEAVQLIADFVKRNHCRLHPDTIDVFSSLSFYEDLSRHNESKSDGKNRYRQKNKNNDLKPSGPEKSENKVKKHQ-LAARLREEVEEDFKAASSAPDSSECRRMQTQTLAAVFETYFRILKCSLDPQLDRHINPTNGDRMHHGFGLRPLLVPCLDGLGKFSHLINVDFMGDLLAHLQKLAAADGTLNTRSGTCLQLMLTVPERLRCCIVAFKIVRSNLDALNIDLQEFFVQLYNLLLDWEPERDNHCETLAEALQIMLCQGRQHDMQRAAAFTKRLASLSLHFESAEAMTVLVTLKNLLQKYVKCRNLLENDGGGGSIGGTVARYQPEASDPELSGALSSILWELALLSKHYHPAVSELADNIASMSMSHNSAVLSTLSPPDAFRTYSTKEGAFRPP---IHQAKPTRKRKSNHASAVSFLSSEEQIKAVEDTDSVGKKFTTHFKVLRDIKENEILRRELNTTLSSLRLYEHYKARKSKK
F6H9Y0_______________ENRDYAGFVSTLDTHSITRHVSRVA---NVKEDALEALYERRLKKK-----AAEKQKEESALQVDPVDALPVKTLDGELYYRTAPKKPKDSE-NAADKYEADGEDGNEGVDKSIVKLTKAERRAKLKKSKKEAKKQGKELDKTEDVQQTPQAAALAEVKQDLTAEETFESKKRKLAELGMALLADPEANIKTLKEMLQISKDDDQAIVKLALLSLLAVFKDIIPGYRIRLPTEKELEMTVSKEVKKKRYYESTLLSTYKAYLQKLMALERQASFQHIVYRCICTLLDAVPHFNFRESLLAAVIKNIGSSDDVVRKLCCATVKSLFTNDGKHGGEATVEAVQLIADHVKAHDCQLHPDSIEVFMYLTFDEDLGRPENPNEDNKVKSKKNKKRKNREESGELQERDKKKNRQELVTKMREEVNADFRAASFAPDVKERRMMQSEALSAVFETYFRILKHSMRQISVR--SEENGSSLPGASGNHPLLVPCLIGLGKFSHLIDLDFMGDLMNCLRKLAC--GSSNS-DGSCNKL-LTVSERLRCCIVAFKVMRNNLEALNVDLQEFFIQLYNLSIEYRPGRDQG-EVLAEALKIMLCDDRQHDMQKAAAFIKRLATFSLCFGSAESMAALVTLKHLLQKNVKCRHLLENDAGGCSVLGSIVKYQPYASDPSQSGALASVLWELNLLSKHYHPAVSTMASNVSGMSTGHNQVYLATVSPQQAFADLSLEHESFINPKNIVMKSNHKRKRGSGSSGAASINPTPDAATPI-DEDGLRKKLSEHFTILHDIKENERLRGELDRVTLSLQVYEEHKNRKKRK

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
670		25		75	0.996473
882	88		11		0.923564
883	88		11		0.923564
937		66		33	0.997452
1136			88	11	0.923564
1137	88		11		0.923564
1138	88			11	0.923564
1217	71		28		1.0
2925			80	20	0.995493
2937	20		80		0.995493
2995	83		16		0.994512
2996			16	83	0.994512
3021	83		16		0.994512
3034	20			80	0.995493
3036	20	80			0.995493
3037		80		20	0.995493
3038			80	20	0.995493
3101	83		16		0.994512
3242	16		83		0.994512
3244			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain