SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23319

Length: 1743 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene23319 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9R831_RICCO	-	-	0.0	40%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	46%
Sma3	Serine-threonine protein kinase, plant-type, putative	-	-	1.212e-07	-

Source	Gene names
Sma3	At2g15320; At5g66330; GSVIVT00014503001; GSVIVT00017830001; GSVIVT00036645001; GSVIVT00036844001; PHYPADRAFT_197698; POPTRDRAFT_219517; POPTRDRAFT_557428; POPTRDRAFT_593883; POPTRDRAFT_761440; POPTRDRAFT_798045; POPTRDRAFT_920538; RCOM_0779050; RCOM_08116

Source	GOs	Term	Type	Identity
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8SD43

Fln msg:

Fln protein: MEICKICFGSVLKLIFLLNIVWATTLESDIEALILVKKGVDAASIGTTTCLGSWDFSVDPCDFRSTRQFVCGIRCDVKTREGKSRVTSLALDGVGYKGYLHPAIGNLTELTELDVAGNAFQGSIPESIARLSKLTRLDLSQNMLSGPLTLSLGKLGSLQVLSISGNMVSGSVPGSLNNLKNLMRLDLSHNRLSGVIPPLGGMISLDNLDLSFNGLVGGIPSQLPRSLSQLTLKSNLLRGNLPLSLSSLSELGVLDASINRLSGAIDGSLFAHPSLQQLNLSNNSFSAISVLNVSGKNSQIVAVDIGFNRITGSLPPNFSTLDSLASLTLRYNQFQGSIPVEYGVKAMNSSRPLARLFLDGNYLIGGVPPDFLRLSPDKISGSFANNCLKSCPSTLLLCQGAQKPASLCKHAYGKVLL*

Protein Length: 419

Fln nts: ACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGATGGTAATTCAATTCTGTATCTCGGCAATTTAGGACTTGAAGAAGCTTGCCATCC_-_ATGGAAATCTGCAAAATTTGTTTTGGGTCTGTGCTGAAATTAATATTTCTTTTGAATATAGTCTGGGCCACTACATTGGAATCAGACATTGAAGCTCTGATTCTGGTGAAAAAGGGGGTGGATGCAGCTTCCATAGGCACAACCACATGCTTGGGTTCATGGGATTTTTCTGTGGATCCCTGCGATTTCAGGTCTACAAGGCAGTTCGTGTGTGGAATTCGATGTGATGTGAAGACTAGGGAGGGCAAGAGCAGAGTGACGAGTTTGGCACTGGATGGTGTGGGATATAAGGGCTACCTACATCCTGCCATTGGCAATCTGACGGAGTTAACAGAGCTGGATGTTGCAGGGAATGCTTTTCAAGGATCTATTCCAGAAAGCATTGCAAGGCTTAGTAAGCTTACCAGGCTTGACTTATCCCAAAATATGTTATCAGGACCCCTGACACTGTCGTTGGGGAAGCTGGGGAGCTTGCAGGTTTTGTCCATTTCAGGGAATATGGTGAGTGGGTCTGTGCCTGGTTCTCTCAATAACTTGAAGAATTTGATGAGGTTGGATCTGTCACACAATCGTTTGAGCGGTGTGATTCCTCCATTGGGTGGGATGATCAGTCTTGATAATTTGGATTTGAGCTTTAATGGGCTTGTGGGTGGTATTCCCTCTCAGCTGCCACGGTCTCTATCTCAGCTGACTCTGAAATCAAATCTCTTGCGTGGGAACCTACCTCTGAGCTTGAGCAGTTTAAGTGAGTTGGGTGTTCTGGATGCGAGCATTAATAGGCTGAGTGGTGCCATTGATGGGTCTCTGTTTGCTCATCCTTCTCTGCAGCAGCTGAATTTGTCAAATAATAGCTTTAGTGCAATCAGTGTGCTGAATGTATCAGGAAAGAACAGCCAAATTGTGGCTGTTGATATTGGGTTCAATAGAATAACGGGGTCCCTTCCCCCTAATTTCTCAACATTGGACTCCCTGGCTTCACTCACTCTGAGATACAATCAGTTTCAGGGATCAATTCCTGTAGAGTATGGTGTTAAGGCTATGAATTCTTCTAGACCTCTGGCTAGATTGTTTTTGGATGGGAATTATCTGATTGGAGGAGTTCCACCTGATTTTCTCAGGCTTTCTCCTGACAAAATTAGTGGGAGCTTTGCCAACAACTGTCTCAAGAGCTGTCCCTCTACTCTCTTGCTCTGTCAGGGGGCACAGAAGCCTGCTTCTCTTTGCAAGCATGCATATGGAAAAGTTCTCTTGTGA___ATATCTCATCATCATCCATATCAGTACAACTATACGGTAAATTTACTATGTTTGTCATGGAGGTAGACAAGCTGACAACCCCTACTTGGGGTTGGGCTTGGGCTCTTCTCAGCTATGTATTAACATGGGACTTCCTTGCATTCTTCCATGCAAACCAGAGTCCCTCTTCTGGTTTGTAATCTTCCATGCAAAACAAACCAGAGTCCTTCCTCCGGTTTGCATCTGGAGTTCTGTGATGGGAGGTCTTAATACTATTAAGACTGAAAAATGCATGGAAGCCATGAATGAATTTTGAATGATGGCTTTGTATAAATTATATTATCAAACCTATATGAGTGAATTCTTTTAACCTATATGACTGAATTCTTGTGTTTCTGTTAATTTACAGAGAATTTC

Fln Alignment:

Contig23319___ICFGSVLKLIFLLNIVW---ATTLESDIEALILVKKGVDAASIGTTTCLGSWDFSVDPCDFRSTRQFVCGIRCDVKTRE-GKS-----RVTSLALDGVGYKGYLHPAIGNLTELTELDVAGNAFQGSIPESIARLSKLTRLDLSQNMLSGPLTLSLGKLGSLQVLSISGNMVSGSVPGSLNNLKNLMRLDLSHNRLSGVIP-PLGGMISLDNLDLSFNGLVGGIPSQLPRSLSQLTLKXXXXXXXXXXXXXXXXXXXXLDASINRLSGAIDGSLFAHPSLQQLNLSNNSFSAISVLNVSGK-----NSQIVAVDIGFNRITGSLPPNFSTLDSLASLTLRYNQFQGSIPVEYGVKAMNSS---RPLARLFLDGNYLIGGVPPDFLRLSPDK--ISGSFANNCLKSCPSTLLLCQGAQKPASLC
D8SD43_______________VALGLVLESVMLLSIATSCAAKTAAVDIQALQQIKSSIDPSTLHSSSCLGSWDFSHDPCDATSSTSFVCGIRCDEELQEEGASTRPPRRVTSIVLDGYGYRGFLSPFVGNLSALQALDVSGNALSGALPASLGKLARLRRLDVSGNAFSGGIPESLGELRSLEHLGLARNALSGTIPASLSRLSSLRRLDLYSNLLSGELPIAMPAMSSLLYLDASSNRITGSFPGRLPPSLVRLSLRDNRLSGQLPSNLGDMAALEVLDVSRNGLWGALPDSIFLHPSLQQVNVAGNAFQWIQTPGLAAMPLVVLGSKMVALDASHNRLRGPLPPFLAELPRLSSLSLTGNMLGGTIPLQYAIKAVESAVGIQPLRRLFLDGNLLVGALPFPFLTWSPSATLISASFANNCLHSCPPSLPFC-GAQRPATQC

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
50	83			16	0.994512
83	83		16		0.994512
154		50	50		1.0
184	20		80		0.995493
256	80			20	0.995493
1360		45	54		1.0
1426	90		10		0.90298
1440	87	12			0.992554
1441	37	62			1.0
1511	11		88		0.923564
1515	12	87			0.992554
1642			75	25	0.996473
1682		75		25	0.996473
1702	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain