SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23312

Length: 504 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene23312 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L14 [Chara globularis]	-	-	4.0e-28	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	60S ribosomal protein L14	-	-	1.176e-08	-

Source	Gene names
Sma3	AT4G27090; At2g20450; At4g27090; Csf-1; OJ1234_B11.29; OSJNOa283G08.1; Os02g0622300; OsI_08121; OsRPL14; PHATR_25577; PHYPADRAFT_109225; PHYPADRAFT_185490; PHYPADRAFT_198630; PHYPADRAFT_214411; POPTRDRAFT_710092; POPTRDRAFT_715222; RL14; RPL14; RPL14A; RP

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L14	IPR002784	-	0.0	-
Sma3	KOW	IPR005824	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G27090.1	Ribosomal protein L14 chr4:13594104-13595187 REVERSE LENGTH=134	6.0e-36	46%
RefSeq	Arabidopsis thaliana	NP_194439.1	60S ribosomal protein L14-2 [Arabidopsis thaliana]	8.0e-36	46%
RefSeq	Populus trichocarpa	XP_002300768.1	predicted protein [Populus trichocarpa]	6.0e-37	48%

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
86	40		60		1.0
113	71		28		1.0
128	12		87		0.992554
148		25		75	1.0
152	75		25		1.0
158			75	25	1.0
167	75	25			1.0
168			75	25	1.0
169		75	25		1.0
179	75		25		1.0
185	37		62		1.0
188	25		75		1.0
191		75	25		1.0
192		25		75	1.0
193		25	75		1.0
209	25		75		1.0
211		25		75	1.0
216		75	25		1.0
220	12	87			0.992554
251	25		75		1.0
293	75		25		1.0
302	25		75		1.0
331		71		28	1.0
335	71		28		1.0
341	71		28		1.0
368	66		33		1.0
370		33		66	1.0
392		33		66	1.0
437		25		75	0.996473
446			25	75	0.996473
448			75	25	0.996473
458		25		75	0.996473
471		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain