SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23301

Length: 565 nt

UniGene Fasta

>sp_v3.0_unigene23301
TATTCACGAGTATCAAGTCATTGGTCGACATAAACCTACCGAAACCGATCCTAAACCAACTTTGTACCGAATGAGAATTTTCGCTGTCAACACTGTTGTTGCCAAATCGCGATTTTGGTACTTTTTGTCTAAGTATCACAAGATGAAGGCTAGTACTGGTGAGATCCTTGCTGTTAATGAAATTAGAGAGAAGAAACCAAACGTGTTGAAAAACTTCGCTGCTTTCATTCGATATGACAGTCGATCTGGAACCCACAACATCTACAAGGAGTTCAGAGATACCTCTCGAGTTGGTGCTGTAGAACAATTGTACCTCGATATGGCTGGTAGACACAGAGCTCGCCCAAGAAGTATTCAAATTATTGATATTAAACACATTCCTGCTTCTCAAGCTAAACGTGCTTACACCACCGAGTTCCACGATGCGAAGATTCGATTCCCTCTTCCTCACAGAGCACAAAGAACCAACAATTCCAGATACGCATCCAAATTCCGAGCAAACAGATCTTCTACTGTTTGGTAATTTTTGCGCCAATAAAAAATTGTACGACATTTGTTGAACACA

Ace file of the UniGene sp_v3.0_unigene23301

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S60 ribosomal protein L18a n=1 Tax=Polysphondylium pallidum RepID=D3B5J6_POLPA	-	-	0.0	61%
FL-Next	sp=60S ribosomal protein L18a; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	Ribosomal protein L18a	-	-	3.314e-13	-

Source	Gene names
Sma3	AT3G14600; At1g29965; At1g29970; At2g34480; At3g14600; CHLREDRAFT_146844; GSVIVT00003438001; GSVIVT00003441001; GSVIVT00005870001; MIE1.10; OSJNBb0053D02.16; OSJNBb0063G05.12; Os01g0666900; Os01g0752300; Os05g0565000; OsI_03189; OsI_03756; OsI_20997; OsJ_

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR002670	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G29965.1	Ribosomal protein L18ae/LX family protein chr1:10498458-10499373 REVERSE LENGTH=178	51%
RefSeq	Arabidopsis thaliana	NP_849729.1	Ribosomal protein L18ae/LX family protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002317384.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0B9

Fln msg: atg_distance in limit (1-15): atg_distance = 6, W2: There is no M at the beginning,

Fln protein: IHEYQVIGRHKPTETDPKPTLYRMRIFAVNTVVAKSRFWYFLSKYHKMKASTGEILAVNEIREKKPNVLKNFAAFIRYDSRSGTHNIYKEFRDTSRVGAVEQLYLDMAGRHRARPRSIQIIDIKHIPASQAKRAYTTEFHDAKIRFPLPHRAQRTNNSRYASKFRANRSSTVW*

Protein Length: 175

Fln nts: TATTCACGAGTATCAAGTCATTGGTCGACATAAACCTACCGAAACCGATCCTAAACCAACTTTGTACCGAATGAGAATTTTCGCTGTCAACACTGTTGTTGCCAAATCGCGATTTTGGTACTTTTTGTCTAAGTATCACAAGATGAAGGCTAGTACTGGTGAGATCCTTGCTGTTAATGAAATTAGAGAGAAGAAACCAAACGTGTTGAAAAACTTCGCTGCTTTCATTCGATATGACAGTCGATCTGGAACCCACAACATCTACAAGGAGTTCAGAGATACCTCTCGAGTTGGTGCTGTAGAACAATTGTACCTCGATATGGCTGGTAGACACAGAGCTCGCCCAAGAAGTATTCAAATTATTGATATTAAACACATTCCTGCTTCTCAAGCTAAACGTGCTTACACCACCGAGTTCCACGATGCGAAGATTCGATTCCCTCTTCCTCACAGAGCACAAAGAACCAACAATTCCAGATACGCATCCAAATTCCGAGCAAACAGATCTTCTACTGTTTGGTAA___TTTTTGCGCCAATAAAAAATTGTACGACATTTGTTGAACACA

Fln Alignment:

Contig23301___HEYQVIGRHKPTETDPKPTLYRMRIFAVNTVVAKSRFWYFLSKYHKMKASTGEILAVNEIREKKPNVLKNFAAFIRYDSRSGTHNIYKEFRDTSRVGAVEQLYLDMAGRHRARPRSIQIIDIKHIPASQAKRAYTTEFHDAKIRFPLPHRAQRTNNSRYASKFRANR
A9P0B9_______________HQYQVVGRSLPTPTDEHPKIFRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVQQMYDEMASRHRVRYPCIQIIKTATIPNELCKRENTKQFQDSKIKFPLVYRKVRPPTRKLKTTFKASR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
262		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain