SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23268

Length: 547 nt

UniGene Fasta

>sp_v3.0_unigene23268
ATGACCCACATCTCTGCTTTCGAGGCGGCTGTCACCGCGGCACTCCGCCCGGTACCCGATTTCCCGATCAAGGGTGTCACGTTCCGCGATATCAGCCCGTTGCTGCTCGACCACAGATTAATGCACAGCGTCGCTGGCGATATGGCTAGTGGACACTACGGCAACGTCGACAAAGTAATGGGAATGGATGCCAGAGGGTTTCTGTTCGCACCGCTAGTCGCACAGGAGCTATGCGCGGGTGTTGTAATGGCTCGTAAACCCAGCAAACTGCCCGGAGATCGTATCGCCGTCGAGTACAACAAAGAGTACGGAAAGGACTCACTAGAGATTGTCGCCGACACCATCAAACCCGGCGACCGTATACTCGTTGTCGACGATATTCTCGCAACGGGCGGAACCGCCGAAGCCGCTGGCATGCTTGTGAGAAAAGCCGGCGGTGTCGTGGCAGGATACGCGTTTGTAGCCGAGATTGTCGGACTCGGTGGGCGCGCTCGCCTTCCTCCCAACGCGGTAAATGCGTGTGTATCGTTGTGAACAAGTTGTTTAC

Ace file of the UniGene sp_v3.0_unigene23268

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Adenine phosphoribosyltransferase n=1 Tax=Intrasporangium calvum DSM 43043 RepID=E6SB75_INTC7	-	-	2.0e-31	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%

Source	ECs	Term	Type	e value	Identity
Sma3	Adenine phosphoribosyltransferase.	EC:2.4.2.7	-	3.657e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Purine metabolism	00230		3.657e-08	%
Sma3	Metabolic pathways	01100		3.657e-08	%

Source	Gene names
Sma3	AT4g12440; AT4g22570; At4g12440; At4g22570; GSVIVT00007310001; RCOM_0250980; VITISV_016996;

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	adenine phosphoribosyltransferase activity	GO:0003999	Molecular Function	-
Sma3	adenine salvage	GO:0006168	Biological Process	-
Sma3	nucleoside metabolic process	GO:0009116	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoribosyltransferase	IPR000836	-	-
Sma3	Adenine phosphoribosyl transferase	IPR005764	-	-
Sma3	ATP phosphoribosyltransferase, conserved site	IPR018198	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1W9

Fln msg: atg_distance in limit (1-15): atg_distance = 4,

Fln protein: MTHISAFEAAVTAALRPVPDFPIKGVTFRDISPLLLDHRLMHSVAGDMASGHYGNVDKVMGMDARGFLFAPLVAQELCAGVVMARKPSKLPGDRIAVEYNKEYGKDSLEIVADTIKPGDRILVVDDILATGGTAEAAGMLVRKAGGVVAGYAFVAEIVGLGGRARLPPNAVNACVSL*

Protein Length: 179

Fln nts: _-_ATGACCCACATCTCTGCTTTCGAGGCGGCTGTCACCGCGGCACTCCGCCCGGTACCCGATTTCCCGATCAAGGGTGTCACGTTCCGCGATATCAGCCCGTTGCTGCTCGACCACAGATTAATGCACAGCGTCGCTGGCGATATGGCTAGTGGACACTACGGCAACGTCGACAAAGTAATGGGAATGGATGCCAGAGGGTTTCTGTTCGCACCGCTAGTCGCACAGGAGCTATGCGCGGGTGTTGTAATGGCTCGTAAACCCAGCAAACTGCCCGGAGATCGTATCGCCGTCGAGTACAACAAAGAGTACGGAAAGGACTCACTAGAGATTGTCGCCGACACCATCAAACCCGGCGACCGTATACTCGTTGTCGACGATATTCTCGCAACGGGCGGAACCGCCGAAGCCGCTGGCATGCTTGTGAGAAAAGCCGGCGGTGTCGTGGCAGGATACGCGTTTGTAGCCGAGATTGTCGGACTCGGTGGGCGCGCTCGCCTTCCTCCCAACGCGGTAAATGCGTGTGTATCGTTGTGA___ACAAGTTGTTTAC

Fln Alignment:

Contig23268___ALRPVPDFPIKGVTFRDISPLLLDHRLMHSVAGDMASGHYG-NVDKVMGMDARGFLFAPLVAQELCAGVVMARKPSKLPGDRIAVEYNKEYGKDSLEIVADTIKPGDRILVVDDILATGGTAEAAGMLVRKXXXXXXXXXXXXEIVGLGGRARL
A9P1W9_______________AIRVVPDFPKPGIMFQDITTLLLDHKAFRDCIDIFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPIRKPKKLPGEVISEEYALEYGTDRIEMHVGAVQPGDRTLVVDDLIATGGTLSAAMRLLERVGAEVVECACVIELPELKGRERL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain