SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23232

Length: 395 nt

UniGene Fasta

>sp_v3.0_unigene23232
AGGGCAGGTCATCAGTAGTTTGCAGTTCATTCACAAAACCAGCGGATCTACAGACTCAGCTTTTATAATCATGAGGTTGAGCTGCAATGGCTGCCGAGTCCTCCGAAAGGGCTGCAGCGAATCCTGCGTTCTCAGGCCCTGCCTCCAATGGATAAAGAGCGCAGAATCTCAGGCGAACGCTACCGCTTTCTTAGCCAAGTTTTACGGGCGCACGGGACTGATCAATCTGATATGCAACGGCCCCGAGCATATGAGACCTGTGGTTTCACATAAGGATGTTATTTATATCGTCTTTCCATGCCAATAGCTACAACAACTCATCATAAAGCCCTGAAGTGGCATAGATTGGAGGTAATTTCACATTTATATGGAAATAACCATCACATCTATTCAAC

Ace file of the UniGene sp_v3.0_unigene23232

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LBD40; LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)	-	-	9.0e-26	78%
FL-Next	sp=LOB domain-containing protein 40; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	78%
Sma3	Seed specific protein Bn15D17A	-	-	4.836e-16	-

Source	Gene names
Sma3	ASL36; ASL37; ASL38; ASL39; ASL40; ASL41; GSVIVT00001451001; GSVIVT00014946001; GSVIVT00017674001; GSVIVT00019643001; GSVIVT00030342001; GSVIVT00038218001; LBD37; LBD38; LBD39; LBD40; LBD41; LBD42; LOC_Os03g33090; LOC_Os03g41330; OSJNBa0035N15.7; OSJNBb00

Source	GOs	Term	Type	e value	Identity
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lateral organ boundaries, LOB	IPR004883	-	0.0	-
Sma3	Asymmetric leaves, AS2/LOB	IPR017414	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G67100.1	LBD40 LOB domain-containing protein 40 chr1:25053801-25054659 FORWARD LENGTH=233	2.0e-33	78%
RefSeq	Arabidopsis thaliana	NP_176881.1	LOB domain-containing protein 40 [Arabidopsis thaliana]	3.0e-33	78%
RefSeq	Populus trichocarpa	XP_002329332.1	predicted protein [Populus trichocarpa]	3.0e-33	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9ZW96

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 125 aas, your sequence is shorter than subject: 79 - 233

Fln protein: MRLSCNGCRVLRKGCSESCVLRPCLQWIKSAESQANATAFLAKFYGRTGLINLICNGPEHMRPVVSHKDVIYIVFPCQ*

Protein Length: 80

Fln nts: AGGGCAGGTCATCAGTAGTTTGCAGTTCATTCACAAAACCAGCGGATCTACAGACTCAGCTTTTATAATC_-_ATGAGGTTGAGCTGCAATGGCTGCCGAGTCCTCCGAAAGGGCTGCAGCGAATCCTGCGTTCTCAGGCCCTGCCTCCAATGGATAAAGAGCGCAGAATCTCAGGCGAACGCTACCGCTTTCTTAGCCAAGTTTTACGGGCGCACGGGACTGATCAATCTGATATGCAACGGCCCCGAGCATATGAGACCTGTGGTTTCACATAAGGATGTTATTTATATCGTCTTTCCATGCCAATAGCTACAACAACTCATCATAAAGCCCTGAAGTGGCATAGATTGGAGGTAATTTCACATTTATATGGAAATAACCATCACATCTATTCAAC

Fln Alignment:

Contig23232___MRLSCNGCRVLRKGCSESCVLRPCLQWIKSAESQANATAFLAKFYGRTGLINLICNGPEHMRPVV
Q9ZW96_______________MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
262			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain