SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23231

Length: 943 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene23231 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	male sterility 2 (MS2) protein [Arabidopsis thaliana] prf\|\|1916413A male sterility 2 gene	-	-	5.0e-37	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Sma3	Male sterility protein 2	-	-	1.193e-08	-

Source	Gene names
Sma3	At3g11980; At3g44540; GSVIVT00025442001; LOC_Os03g07140; MS2; MS2-F; OSJNBa0091P11.14; Os03g0167600; OsI_10168; PHYPADRAFT_11916; PHYPADRAFT_120173; POPTRDRAFT_576417; POPTRDRAFT_866086; RCOM_0355360;

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	fatty-acyl-CoA reductase (alcohol-forming) activity	GO:0080019	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Male sterility	IPR004262	-	-
Sma3	Male sterility, NAD-binding	IPR013120	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002323348.1	predicted protein [Populus trichocarpa]	0.0	46%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	C %	G %	T %	Probability
170	33	66		1.0
198		33	66	1.0
221	33	66		1.0
535		20	80	0.995493
538	80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain