SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23106

Length: 721 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene23106 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Class I peptide chain release factor [Arabidopsis thaliana] ref\|NP_001077761.1\| Class I peptide chain release factor [Arabidopsis thaliana] gb\|AAO22610.1\| unknown protein [Arabidopsis thaliana] gb\|AAO42344.1\| unknown protein [Arabidopsis thaliana] gb\|AEE3	-	-	2.8026e-45	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Immature colon carcinoma transcript, putative	-	-	1.964e-09	-

Source	Gene names
Sma3	At1g62855; GSVIVT00007252001; GSVIVT00010320001; LOC_Os03g14510; MICPUN_103717; Os03g0249200; OsI_10760; OsJ_10143; PHYPADRAFT_98884; POPTRDRAFT_646490; POPTRDRAFT_671184; RCOM_1680630; RCOM_1684650; RCOM_2106210;

Source	GOs	Term	Type	e value	Identity
Sma3	translation release factor activity	GO:0003747	Molecular Function	0.0	-
Sma3	translational termination	GO:0006415	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptide chain release factor class I/class II	IPR000352	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G62850.2	Class I peptide chain release factor chr1:23272608-23274211 REVERSE LENGTH=236	49%
RefSeq	Arabidopsis thaliana	NP_001077761.1	Class I peptide chain release factor [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002329853.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
628		14		85	0.993533
673	14		85		0.993533
675	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain