SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23105

Length: 2125 nt

UniGene Fasta

>sp_v3.0_unigene23105
GATCAATTTGGTGGGAATCGACAAATATATATATATATATAAAAGACAAGAGGGTTTATTCCAAGAACAAGCTTGAGAGGAAGAATTAGGAACGATGGCGAAGTATAGTCCAGAGAATGGTTTGCGTGCAGGTTACTTTGTGGACGATGGGATGGAGCAAATGAAGCTCGATCCGAGGTTGCCTCTGTTGCAGGAGGCCGATCTCAAAGACAAAATCGTTCTTCTCAGAGTCGATCACAATGTCGTCAAGAAAGGGAAAGTACTAGATCAGTACAGAATCGATGTGACTCTGCCAACTATGTACAACATAGTGGAGCGAGGTGGAAGGCTCATAATCATGAGTCACATTGGACGCCCGTACGATAAGAAGACAAAAACTATCTCTATACGTGAGGATGATTCTGTGGATGCTGTTGTTGCATATTTGCAACGCAAACTCCGCATCAAATTTGCAATTCCCCGTTTAAGTACTACTGAAAAAAATGGAATTCTGGATATTGATACCTCCATCAACTGGTTGATCCATGACCTTAAGATTCGGAAAATTGGTGGAATTTACCTACCCAATAGCCGATGGTTTGCGGGGGAGGAAGACAAAGGACAAAAGCTTGAAAGATTTGTCATTCAACTTTCGGCTCTAGCTGATGTATATGTCAATGATGCATTTGGCTCGTGGCAGCCTCATGGTTCCACGTACCATATTGCGAAATGCTTGCCCTCATATGCAGGATTGTGCATGCAGGATGAACTTTATCATGTGCAAGCAGTCTTGAATCCCACGAGGCCGTTTGTTGCAATTGTTGCTGGTGCAAAGTATGATACAAAGATTGGTCCATTAAATGAGATCTACAAGAAAGTTGATAAATTGGTTCTGGGTGGTCTCATATACAATACTTATCTATGTGCTAAATATCGAGTTAAAATTGCTGGCGTTGAGGATTCAGATATTGAACTTGCAAAAGAGCTGGTAGAACAGGATAAGACGCACAAAAAAATTGTAGAGATGCAGGTGCTTGTTGAATCTGATACTCTGGATGGTAGAGTTGAAGGGCATTTTAGAACAATCAATATCAAGGACTTTGCTCCTGGCCAGACGTACAAGTATGTTGTTGATGTTGATCCCACCTCATTTGAGAAAGATGAGGTTGAACAAGCAATGAACTCAGCCAAGACAATATTTGTTAATGCTGTGATGGGACTCATGCCGCATTTCTGGCATGGCACAAGCAAAATGGATGAGGCGATTGATAAAAATCGCGCAGCTCAAAAATTCTTTGGAGGTGGTGATACCCTTCAGACTTTTAAAAGCCTTCATCCTCTGCTGTATGAGGCCGCATTGGACAATATCAAATACTATTTATTTACGGGAGGTGGTACTGTTTTGAAGGTTATTGAAGAGGGAGATCCAATGGGATTGGAGACTGTAAAGGCTCTTATTGACAACAAGGCAAACTATTTTAAGAGCATTCAAATGAATTGAAGCTAGCTTATGACACATGCTTTAGCGTGCAGAGTAAGGGGTTGATATCTCTCATAGGAATTGGTTAAAGACATATGCTGTTTGGTATAATACAGCCATCGTGCAGAGATAGCTGATTTAAGGCTTATATGGTAGATTTTTTGATAATTTAGTACTTTTATATTTGTAGAGGATTCCAAAGAATATAGCAGGAGAGTGTTATGTAATGTAGCTATAATGACCACAAGGGCGGCTGTGTGAGTCAGTATAAAACGTTAAAGCGTTCCTTCGCCAGTTCTTATCGCTAGTGTTTTGGGGACGTGTCAATAAAAATGTAAAACTGGTGTCATGCTACAAGACACCCCTTTCCTAGTTCTTGTTGCCTGACACATTGATGTACATAGATCCATCTTAATCCGAGTAAAACTTCTCACTGCTTAAATTTGGTCTCTCTGTGCAAAAATATGTAGTTGCATTAGTTACTACATTTGTGTTCCCAAGATATTTGGATGGCAGTCTATAAATTGTCTGCAAACTCTATGGAGACTATGTAGGGAATACAACAATTATTTGGAGTGACTATATATCTATGCTACCGTTCCACCTATGTGGCCAGAAAACAGAGATGTCACTTTCGGTTTTATAAAATGTTTGTTGCAAGTATAC

Ace file of the UniGene sp_v3.0_unigene23105

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoglycerate kinase n=4 Tax=Picea sitchensis RepID=A9NW50_PICSI	-	-	0.0	79%
FL-Next	sp=Phosphoglycerate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Phosphoglycerate kinase	-	-	2.059e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoglycerate kinase.	EC:2.7.2.3	-	4.811e-20	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	4.811e-20	%
Sma3	Carbon fixation in photosynthetic organisms	00710	4.811e-20	%
Sma3	Biosynthesis of phenylpropanoids	01061	4.811e-20	%
Sma3	Biosynthesis of terpenoids and steroids	01062	4.811e-20	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	4.811e-20	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	4.811e-20	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	4.811e-20	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	4.811e-20	%
Sma3	Biosynthesis of plant hormones	01070	4.811e-20	%
Sma3	Metabolic pathways	01100	4.811e-20	%
Sma3	Biosynthesis of secondary metabolites	01110	4.811e-20	%

Source	Gene names
Sma3	MICPUCDRAFT_69728; MICPUN_104803; OSTLU_30288; Ot02g05220; PGK_2; PHYPADRAFT_163682; PHYPADRAFT_166513; PHYPADRAFT_167442; PHYPADRAFT_171465;

Source	GOs	Term	Type	e value	Identity
Sma3	phosphoglycerate kinase activity	GO:0004618	Molecular Function	0.0	-
Sma3	glycolysis	GO:0006096	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Phosphoglycerate kinase	IPR001576	-	-
Sma3	Phosphoglycerate kinase, N-terminal	IPR015824	-	-
Sma3	Phosphoglycerate kinase, C-terminal	IPR015901	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLT2

Fln msg:

Fln protein: MAKYSPENGLRAGYFVDDGMEQMKLDPRLPLLQEADLKDKIVLLRVDHNVVKKGKVLDQYRIDVTLPTMYNIVERGGRLIIMSHIGRPYDKKTKTISIREDDSVDAVVAYLQRKLRIKFAIPRLSTTEKNGILDIDTSINWLIHDLKIRKIGGIYLPNSRWFAGEEDKGQKLERFVIQLSALADVYVNDAFGSWQPHGSTYHIAKCLPSYAGLCMQDELYHVQAVLNPTRPFVAIVAGAKYDTKIGPLNEIYKKVDKLVLGGLIYNTYLCAKYRVKIAGVEDSDIELAKELVEQDKTHKKIVEMQVLVESDTLDGRVEGHFRTINIKDFAPGQTYKYVVDVDPTSFEKDEVEQAMNSAKTIFVNAVMGLMPHFWHGTSKMDEAIDKNRAAQKFFGGGDTLQTFKSLHPLLYEAALDNIKYYLFTGGGTVLKVIEEGDPMGLETVKALIDNKANYFKSIQMN*

Protein Length: 463

Fln nts: GATCAATTTGGTGGGAATCGACAAATATATATATATATATAAAAGACAAGAGGGTTTATTCCAAGAACAAGCTTGAGAGGAAGAATTAGGAACG_-_ATGGCGAAGTATAGTCCAGAGAATGGTTTGCGTGCAGGTTACTTTGTGGACGATGGGATGGAGCAAATGAAGCTCGATCCGAGGTTGCCTCTGTTGCAGGAGGCCGATCTCAAAGACAAAATCGTTCTTCTCAGAGTCGATCACAATGTCGTCAAGAAAGGGAAAGTACTAGATCAGTACAGAATCGATGTGACTCTGCCAACTATGTACAACATAGTGGAGCGAGGTGGAAGGCTCATAATCATGAGTCACATTGGACGCCCGTACGATAAGAAGACAAAAACTATCTCTATACGTGAGGATGATTCTGTGGATGCTGTTGTTGCATATTTGCAACGCAAACTCCGCATCAAATTTGCAATTCCCCGTTTAAGTACTACTGAAAAAAATGGAATTCTGGATATTGATACCTCCATCAACTGGTTGATCCATGACCTTAAGATTCGGAAAATTGGTGGAATTTACCTACCCAATAGCCGATGGTTTGCGGGGGAGGAAGACAAAGGACAAAAGCTTGAAAGATTTGTCATTCAACTTTCGGCTCTAGCTGATGTATATGTCAATGATGCATTTGGCTCGTGGCAGCCTCATGGTTCCACGTACCATATTGCGAAATGCTTGCCCTCATATGCAGGATTGTGCATGCAGGATGAACTTTATCATGTGCAAGCAGTCTTGAATCCCACGAGGCCGTTTGTTGCAATTGTTGCTGGTGCAAAGTATGATACAAAGATTGGTCCATTAAATGAGATCTACAAGAAAGTTGATAAATTGGTTCTGGGTGGTCTCATATACAATACTTATCTATGTGCTAAATATCGAGTTAAAATTGCTGGCGTTGAGGATTCAGATATTGAACTTGCAAAAGAGCTGGTAGAACAGGATAAGACGCACAAAAAAATTGTAGAGATGCAGGTGCTTGTTGAATCTGATACTCTGGATGGTAGAGTTGAAGGGCATTTTAGAACAATCAATATCAAGGACTTTGCTCCTGGCCAGACGTACAAGTATGTTGTTGATGTTGATCCCACCTCATTTGAGAAAGATGAGGTTGAACAAGCAATGAACTCAGCCAAGACAATATTTGTTAATGCTGTGATGGGACTCATGCCGCATTTCTGGCATGGCACAAGCAAAATGGATGAGGCGATTGATAAAAATCGCGCAGCTCAAAAATTCTTTGGAGGTGGTGATACCCTTCAGACTTTTAAAAGCCTTCATCCTCTGCTGTATGAGGCCGCATTGGACAATATCAAATACTATTTATTTACGGGAGGTGGTACTGTTTTGAAGGTTATTGAAGAGGGAGATCCAATGGGATTGGAGACTGTAAAGGCTCTTATTGACAACAAGGCAAACTATTTTAAGAGCATTCAAATGAATTGA___AGCTAGCTTATGACACATGCTTTAGCGTGCAGAGTAAGGGGTTGATATCTCTCATAGGAATTGGTTAAAGACATATGCTGTTTGGTATAATACAGCCATCGTGCAGAGATAGCTGATTTAAGGCTTATATGGTAGATTTTTTGATAATTTAGTACTTTTATATTTGTAGAGGATTCCAAAGAATATAGCAGGAGAGTGTTATGTAATGTAGCTATAATGACCACAAGGGCGGCTGTGTGAGTCAGTATAAAACGTTAAAGCGTTCCTTCGCCAGTTCTTATCGCTAGTGTTTTGGGGACGTGTCAATAAAAATGTAAAACTGGTGTCATGCTACAAGACACCCCTTTCCTAGTTCTTGTTGCCTGACACATTGATGTACATAGATCCATCTTAATCCGAGTAAAACTTCTCACTGCTTAAATTTGGTCTCTCTGTGCAAAAATATGTAGTTGCATTAGTTACTACATTTGTGTTCCCAAGATATTTGGATGGCAGTCTATAAATTGTCTGCAAACTCTATGGAGACTATGTAGGGAATACAACAATTATTTGGAGTGACTATATATCTATGCTACCGTTCCACCTATGTGGCCAGAAAACAGAGATGTCACTTTCGGTTTTATAAAATGTTTGTTGCAAGTATAC

Fln Alignment:

Contig23105___MAKYSPENGL-RAGYFVDDGMEQMKL-DPRLPLLQEADLKDKIVLLRVDHNVVKKGKVLDQYRIDVTLPTMYNIVERGGRLIIMSHIGRPYDKKTKTISIREDDSVDAVVAYLQRKLRIKFAIPRLSTTEKNGILDIDTSINWLIHDLKIRKIGGIYLPNSRWFAGEEDKGQKLERFVIQLSALADVYVNDAFGSWQPHGSTYHIAKCLPSYAGLCMQDELYHVQAVLNPTRPFVAIVAGAKYDTKIGPLNEIYKKVDKLVLGGLIYNTYLCAKYRVKIAGVEDSDIELAKELVEQDKTHKKIVEMQVLVESDTLDGRVEGHFRTINIKDFAPGQTYKYVVDVDPTSFEKDEVEQAMNSAKTIFVNAVMGLMPHFWHGTSKMDEAIDKNRAAQKFFGGGDTLQTFKSLHPLLYEAALDNIKYYLFTGGGTVLKVIEEGDPMGLETVKALIDNK
B8LLT2_______________MAPYGQENGLTRIGYSVDDGLENDKIADPRLPLLPDADLKDKIVLLRVDHNVVKKGEILDQYRIDVTLPTLYNITERGGRPILMTHVGRPYDKKNKTVTIRKDESVDAIVAYLQRKLRIKFVVPKFNYDEKDGILDIDTSINWLITDLRKRKIGGIYLPNTRWFAGEEDKGEKLERFAIQLAGLADVFVNDAFGSWQPHGSTYHITKYLPSYAGLCMQDELYHVEAVLNPTRPFIAIVAGSKYDTKIGPLNQIYKKVDKLVLGGVIYNTYLCAKYGVKIAGVQDSDIELAKELVEQDKTQGKIVEMDILVETDTLSGRFEGKYRAVNVKDFAPGKTYNYIVDIDPLSLESEDVLQALNSAKTIFVNAVMGFMPNFWHGTSKLDEVIDNNQSAKKYFGGGDTLQAFKSLHPNLYQAALDNTNYYLFTGGGTVLKVIEEGDSMGLDTVRALIENK

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
61		66	33		0.997452
151			80	20	0.995493
215	50		50		1.0
985	16		83		1.0
1454			4	85	0.999726
1459	9			80	0.999537
1461	90		9		0.999872
1700	87		12		0.992554
1701		87	12		0.992554
1832		19	80		1.0
1858	89		10		1.0
1870	19	80			1.0
1896	10	82			1.0
1897		25		7	1.0
1906	42		57		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
25	41	AT AT AT AT AT AT AT AT A	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain