SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23093

Length: 2439 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene23093
GAGTCAACGAAAGGCACCTTCGACATCGAAATATGACGATTCAAAGGAAGCTTCAGTCTCTTCTTCTGATTTGACTAGAAAAGTCAGCGAGAAGATGCTAAAATTACCTCAAGAACCTGATTCAGTTTCTGTTGTCTCTTTCGCAACTCCTGTTGGCATTTCTTTATCTGCCAATGAAAGGTCATCAACTTTACATCAATTAGGGAGCTCAATGAATGGCATGAACTCATTAAATATGGGGCCGTCAACATTGTCTAACAGAGAGGATAAATGGACCGTCAGGACCTGTGTATGAGTTTGTAGGAGATAGCCATGAAGCCATTAATAAGCCTGTTGAATATGTAAAGCCTGTGGACAATGTAAGGTCTGTGGACATTGGTCAAGTCACTGAAAAGTTTAATACATGTGGAATTAAGTGGCTCAGTACCCAGTCAAGCAGATGTGGAATCAGATGCAACTGTCAGAGATTTTAAGATACAAAACACAGCTGAAATACCTAGTGGGGGTAATTTTTCTGTGAACAACTTAGATGCTGGCAACAATGTTCCTGTAATCAAGAGTCAGGCTGTTCATCAGTTTGAAAGTCAAACCAAGGATATTTATAACTCTGAAGCATATTCAGAAAATCTGTCTGTATTTCATGTGAACAATGGACAATCCAATGACATTGTCAGTACTGAGGGAATTTGTGAATCAAACAATCTTTTTCAAAGCTTACCAACGACTGAGGAAATAAAAGGCGAGGAGTTATCTTTGGATACTGAGTTAAGTACAGCTCCTGATGAACCACATGAAAAAAGTGTTCAAGAGCTACCATTTCCAGCTTTGGACGGAGAATTGACACTGATTGAGGTCAACAGAAAGGAGAACAAAGATAGCACTTCAATTGCTGCAAGATTTAGGAAAAGTGACTTTTATCAACTCAAAGAAGTTCCACATGATACGGAGCTGCCTTCTGTATCTAGTGGCATTTGCAGAGAAGCAATGGCTATGTATGAACAATTACCCTCTTTTGCTAGTGAATTTAAAGCTGAGGAAGTATTATATGGTGTTGCAAAAAAAGGTAATACTAATTTGAGGGACAAGCCTATGAATATAGTTCATAATACTATCGAAAAGAATGAAAGTACCCCTCCTGTTACCAATCATCAGGCTGTAGCCACAGCCTCTATTGGCGCTGGAAATAAGAGGGCTGGTAGCAAGAAGAAGAAGAGGAAAGAATGTTTGGCCAAAGCTGACGCTTCCAGTTCAGCTGGTGATTTGTATAATGCATACAAGGCACCAGAAGAAAAGCAGAAAGATGTAAGTTATCCAGATGCATCAACTGTAGCTGTTCCCATTGTTAATGAAAAAGCCTTTGTCAATGACTCTGAGAAGGAAAGTCAGAAAGAACTAGATGACTGGGAAGATGTAGCTGAATTTCCTACTCAAAACGAAGTGACAGAAGAATGTGCCATGATATCTACTAATGCAAAGCAAATGGTTGTACCAAAGGCAAGATGTCTGGAAGATAGAAAGTACACAAGGGATTTCTTGTTGACATTTAAGGATCAGTTTAGAAAATTACCTGTTGAGTTAGTTCAATCTGATATAATGGAAATACTCAGCCCTTCCAGGTTTATGAGCCATATGGGCGAAATACAGACATCACCAAACCTTGGAAGGGCTCTTGATTGGCAGCTTAGTGGGAATGTTCGACCTGAACACCTTGGAAACAATTTAGGAGCTGAGGATAAATGGAACAGATCAGGTGGAAGTTTTCCTCCAGGGAAGGACATTCGGGTGGAAGTAAGCCCTGGGGGGCCTACTGGTGGGTTTCGACCTGGGCAAGGTATAAATCCAGGACTTTTGAGGAATGTGCGTGGAGCACCAATGAATGCATTTATTGCCTCTCCTAATTCTGGTGGTCCATTGACACAAATGCATGTTCCTCCAGGTGGCTTTCCAAGGAATGCTTCTGATGCTGATAGGTGGCAACGAGCTCCTGCTTCCTCCCAGAAGGGCTTGTTTTCATCTCCACGTAATAATTTTCCTGCAATGCACAAAGCAGAGAACAAGTATGAAGTTGGTAAAGTTTCCGATGATGAGCAGTTGAAACAAAGACAGATTAAAGCAATATTAAATAAATTAACACCGCAAAATTTTGATAAACTTTTTGAACAGGTAAAAGAAGTTGATATTGATTCTGCACTAACTCTTACGGGTGTCATATCTCAAATATTTGATAAAGCCTTAATGGAGCCCACATTCTGTGAGATGTATTCAAAGTTTTGTGTTGATCTTGCTGCTGATTTACCTGAATTTAACGAAAATAATGAGAAAATTACCTTTAGGCGAGTCCTTCTGAACAAATGTCAGGAAGAATTTGAAAGGGGGGAAAGGGAACAAGCGGAAGCTGATAGGCTGGAAGAAGAAGGTGAAGTAAAGCTATCCAAAGAT

Ace file of the UniGene sp_v3.0_unigene23093 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Eukaryotic translation initiation factor 4G n=2 Tax=Carica papaya RepID=E3V0H9_CARPA	-	-	0.0	44%
FL-Next	Isoform 2 of Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G	-	-	0.0	44%

Source	Gene names
Sma3	CHLREDRAFT_100523; GSVIVT00017187001; GSVIVT00019025001; MICPUN_71782; OSJNBa0029H02.9; OSJNBa0058I18.6; OSTLU_7162; Os04g0499300; Os07g0555200; OsI_16505; OsJ_15338; OsJ_24703; PHYPADRAFT_132424; PHYPADRAFT_186620; POPTRDRAFT_644266; POPTRDRAFT_677642; P

Source	GOs	Term	Type	Identity
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	RNA metabolic process	GO:0016070	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Enhancer of rudimentary	IPR000781	-	-
Sma3	MIF4G-like, type 3	IPR003890	-	-
Sma3	Initiation factor eIF-4 gamma, MA3	IPR003891	-	-
Sma3	MIF4-like, type 1/2/3	IPR016021	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002326844.1	predicted protein [Populus trichocarpa]	0.0	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q76E23-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 518 aas, your sequence is shorter than subject: 813 - 1725

Fln protein: ESTKGTFDIEI*RFKGSFSLFF*FD*KSQREDAKITSRT*FSFCCLFRNSCWHFFICQ*KVINFTSIRELNEWHELIKYGAVNIV*QRG*MDRQDLCMSL*EIAMKPLISLLNM*SLWTM*GLWTLVKSLKSLIHVELSGSVPSQADVESDATVRDFKIQNTAEIPSGGNFSVNNLDAGNNVPVIKSQAVHQFESQTKDIYNSEAYSENLSVFHVNNGQSNDIVSTEGICESNNLFQSLPTTEEIKGEELSLDTELSTAPDEPHEKSVQELPFPALDGELTLIEVNRKENKDSTSIAARFRKSDFYQLKEVPHDTELPSVSSGICREAMAMYEQLPSFASEFKAEEVLYGVAKKGNTNLRDKPMNIVHNTIEKNESTPPVTNHQAVATASIGAGNKRAGSKKKKRKECLAKADASSSAGDLYNAYKAPEEKQKDVSYPDASTVAVPIVNEKAFVNDSEKESQKELDDWEDVAEFPTQNEVTEECAMISTNAKQMVVPKARCLEDRKYTRDFLLTFKDQFRKLPVELVQSDIMEILSPSRFMSHMGEIQTSPNLGRALDWQLSGNVRPEHLGNNLGAEDKWNRSGGSFPPGKDIRVEVSPGGPTGGFRPGQGINPGLLRNVRGAPMNAFIASPNSGGPLTQMHVPPGGFPRNASDADRWQRAPASSQKGLFSSPRNNFPAMHKAENKYEVGKVSDDEQLKQRQIKAILNKLTPQNFDKLFEQVKEVDIDSALTLTGVISQIFDKALMEPTFCEMYSKFCVDLAADLPEFNENNEKITFRRVLLNKCQEEFERGEREQAEADRLEEEGEVKLSKD

Protein Length: 814

Fln nts: GAGTCAACGAAAGGCACCTTCGACATCGAAATATGACGATTCAAAGGAAGCTTCAGTCTCTTCTTCTGATTTGACTAGAAAAGTCAGCGAGAAGATGCTAAAATTACCTCAAGAACCTGATTCAGTTTCTGTTGTCTCTTTCGCAACTCCTGTTGGCATTTCTTTATCTGCCAATGAAAGGTCATCAACTTTACATCAATTAGGGAGCTCAATGAATGGCATGAACTCATTAAATATGGGGCCGTCAACATTGTCTAACAGAGAGGATAAATGGACCGTCAGGACCTGTGTATGAGTTTGTAGGAGATAGCCATGAAGCCATTAATAAGCCTGTTGAATATGTAAAGCCTGTGGACAATGTAAGGTCTGTGGACATTGGTCAAGTCACTGAAAAGTTTAATACATGTGGAATTAAGTGGCTCAGTACCCAGTCAAGCAGATGTGGAATCAGATGCAACTGTCAGAGATTTTAAGATACAAAACACAGCTGAAATACCTAGTGGGGGTAATTTTTCTGTGAACAACTTAGATGCTGGCAACAATGTTCCTGTAATCAAGAGTCAGGCTGTTCATCAGTTTGAAAGTCAAACCAAGGATATTTATAACTCTGAAGCATATTCAGAAAATCTGTCTGTATTTCATGTGAACAATGGACAATCCAATGACATTGTCAGTACTGAGGGAATTTGTGAATCAAACAATCTTTTTCAAAGCTTACCAACGACTGAGGAAATAAAAGGCGAGGAGTTATCTTTGGATACTGAGTTAAGTACAGCTCCTGATGAACCACATGAAAAAAGTGTTCAAGAGCTACCATTTCCAGCTTTGGACGGAGAATTGACACTGATTGAGGTCAACAGAAAGGAGAACAAAGATAGCACTTCAATTGCTGCAAGATTTAGGAAAAGTGACTTTTATCAACTCAAAGAAGTTCCACATGATACGGAGCTGCCTTCTGTATCTAGTGGCATTTGCAGAGAAGCAATGGCTATGTATGAACAATTACCCTCTTTTGCTAGTGAATTTAAAGCTGAGGAAGTATTATATGGTGTTGCAAAAAAAGGTAATACTAATTTGAGGGACAAGCCTATGAATATAGTTCATAATACTATCGAAAAGAATGAAAGTACCCCTCCTGTTACCAATCATCAGGCTGTAGCCACAGCCTCTATTGGCGCTGGAAATAAGAGGGCTGGTAGCAAGAAGAAGAAGAGGAAAGAATGTTTGGCCAAAGCTGACGCTTCCAGTTCAGCTGGTGATTTGTATAATGCATACAAGGCACCAGAAGAAAAGCAGAAAGATGTAAGTTATCCAGATGCATCAACTGTAGCTGTTCCCATTGTTAATGAAAAAGCCTTTGTCAATGACTCTGAGAAGGAAAGTCAGAAAGAACTAGATGACTGGGAAGATGTAGCTGAATTTCCTACTCAAAACGAAGTGACAGAAGAATGTGCCATGATATCTACTAATGCAAAGCAAATGGTTGTACCAAAGGCAAGATGTCTGGAAGATAGAAAGTACACAAGGGATTTCTTGTTGACATTTAAGGATCAGTTTAGAAAATTACCTGTTGAGTTAGTTCAATCTGATATAATGGAAATACTCAGCCCTTCCAGGTTTATGAGCCATATGGGCGAAATACAGACATCACCAAACCTTGGAAGGGCTCTTGATTGGCAGCTTAGTGGGAATGTTCGACCTGAACACCTTGGAAACAATTTAGGAGCTGAGGATAAATGGAACAGATCAGGTGGAAGTTTTCCTCCAGGGAAGGACATTCGGGTGGAAGTAAGCCCTGGGGGGCCTACTGGTGGGTTTCGACCTGGGCAAGGTATAAATCCAGGACTTTTGAGGAATGTGCGTGGAGCACCAATGAATGCATTTATTGCCTCTCCTAATTCTGGTGGTCCATTGACACAAATGCATGTTCCTCCAGGTGGCTTTCCAAGGAATGCTTCTGATGCTGATAGGTGGCAACGAGCTCCTGCTTCCTCCCAGAAGGGCTTGTTTTCATCTCCACGTAATAATTTTCCTGCAATGCACAAAGCAGAGAACAAGTATGAAGTTGGTAAAGTTTCCGATGATGAGCAGTTGAAACAAAGACAGATTAAAGCAATATTAAATAAATTAACACCGCAAAATTTTGATAAACTTTTTGAACAGGTAAAAGAAGTTGATATTGATTCTGCACTAACTCTTACGGGTGTCATATCTCAAATATTTGATAAAGCCTTAATGGAGCCCACATTCTGTGAGATGTATTCAAAGTTTTGTGTTGATCTTGCTGCTGATTTACCTGAATTTAACGAAAATAATGAGAAAATTACCTTTAGGCGAGTCCTTCTGAACAAATGTCAGGAAGAATTTGAAAGGGGGGAAAGGGAACAAGCGGAAGCTGATAGGCTGGAAGAAGAAGGTGAAGTAAAGCTATCCAAAGAT

Fln Alignment:

Contig23093___ECLAKADASSSAGDLYNAYKAPEEKQK--DVSYPDASTVAVPIVNEKAFVNDSEKESQKELDDWEDVAEFPTQNEVTEECAMISTNAKQMVVPKARCLEDRKYTRDFLLTFKDQFRKLPVEL-VQSDIMEILSPSRFMSHMGEIQTSPNLGRALDWQLSGNVRPEHLGNNLGAEDKWNRSGGSFPPGKDIRVEVSXXXXXXXXXXXXGINPGLLRNVRGAPMNAFIASPNSGGPLTQMHVPPGGFPRNASDADRWQRAPASSQKGLFSSPRNNFPAMHKAENKYEVGKVSDDEQLKQRQIKAILNKLTPQNFDKLFEQVKEVDIDSALTLTGVISQIFDKALMEPTFCEMYSKFCVDLAADLPEFNENNEKITFRRVLLNKCXXXXXXXXXXXXXADRLEEEGEVKLSKD
Q76E23-2_____________EILQKADAAGTTSDLYMAYKGPEEKKESSNVVHDVSNQNLLPAIPQAVEAIVDTEPVKNEPEDWEDAADVSTPKLETADNSVNAKRGSSDEVSDNCINTEKKYSRDFLLKFADLCTALPEGFDVSPDIANALIVAYMGASHHEHDSYPTPGKVMDRQASG-ARLDRRPSNVAGDDRWTKNQGSLPAGYGGNVGFRPGQGG---------NSGVLRNPR-------MQGPIISRPMQPVG-PMGGMGRNTPDLERWQRGSNFQQKGLFPSPHTPMQVMHKAERKYQVGTIADEEQAKQRQLKSILNKLTPQNFEKLFEQVKSVNIDNAVTLSGVISQIFDKALMEPTFCEMYADFCFHLSGALPDFNENGEKITFKRLLLNKCQEEFERGEKEEEEASRVAEEGQVEQTEE

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
552		66		33	1.0
556	66		33		1.0
560	16		83		0.994512
622	66		33		1.0
746	66	33			1.0
805	25		75		0.996473
865		85		14	0.993533
866			14	85	0.993533
867		85		14	0.993533
982		90		10	0.90298
986			90	10	0.90298
989		90		10	0.90298
993		90	10		0.90298
994			10	90	0.90298
1059	12			87	0.992554
1091	14			85	0.993533
1092	12	87			0.992554
1216	83		16		0.994512
1230		16		83	0.994512
1333	16			83	0.994512
1336			16	83	0.994512
1337	83			16	0.994512
1506		16		83	0.994512
1507		16	83		0.994512
1508		16	83		0.994512
1510	83			16	0.994512
1776		20	80		0.995493
1777		20		80	0.995493
2035		33		66	1.0
2036	33	66			1.0
2040			33	66	1.0
2286		12	87		0.992554
2287		87		12	0.992554
2348		11		88	0.923564
2349	11	88			0.923564
2406	14		85		0.993533
2408		85		14	0.993533
2433	20			80	0.995493
2435	20		80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1227	1239	TCT TCT TCT TCT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain