SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23040

Length: 2221 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene23040
GAATTTATGATTTTATTTTGCAGCAAAATCGATATCTTTCTTGTTGAAGTTTACATATCATTGTCTCCTGTTAATATACGTATTTTTAGCATTTGTTTGCATTTTCAAGTTTTTGTTGAATCCTGATTTCCATTAATGGGGATGGAAGCTTTTAGTAATCACGTTATTCGAGGCCTGAAAAGCAGATGGATGATGGCTGTAGCGTGCTTTCTTATTCTCTCGTTTGCTGGATCGAATTATATTTTTGGTTTGTATTCCCAAACTATTAAGATAAATCTGGGATATGATCAGGAGGTGATAGATACATTGGCCTTTTTCAAGGACTTGGGTGCAAACGTGGGCATCATTGCTGGCCTCATCAATCAATTTGGGCCACCATGGGTGGTTCTCACAATTGGTTCAGTGATGAACCTCACTGGATATCTCATGATTTGGCTCTCTGTCACAGGCAAAGTTGCCAAGCCTGCAATGTGGCAGATGTACTTGTATCAATGCATTGGAGGGAGCTCCATGACATTTGTTAATACTGGAATAATTGTGACTTGTGTCAAGAATTTCCCTAGAGGTAGAGGGCTAGTCATTGGGCTGCTCAAGGGGTTTGTAGGTCTAAGTGGTGCTATTATCACTCAGATCTATAGGGCTAGTGTTAGCAAGGATGATCACCCCAGCTTTCTCATAATTTTGGCTGCTACTCTTCCTACTGCTATAGTGCTCCTATTGATGCCTTTCATTCGGCCTATGGAGGCTCCAAAGGAGAAGAATGAGACTAAGAATTTCTATATTTTTCTTGCCATGGCCTTAGCACTGGCAGGCTTTCTAATGGTTTTTATTTTGCTGGAAAACTTGTTGGTACTTCCACAGTTTGTGATTCAGTTGTTTGCTGCAGTAACAATTCTGATAATCTTCTTCCCATTGCTTATAGTCATACGGTCTGTGCTTCAAAAGTCAGACAATGTTGTTCAAGGGGATCAGTTCAATGATGCATTCTCAGATAGAGGGAAGTCTAAGGTTGAACTGCAAAGGTCCTGTAACGATATCCACTCTGGGATATCAGTACTGGTAACAGAAGGCAATTCTGCAGAGAACAGCAATGAAGTCATGGTTGCTGACGATGACAAGAAATTGAAAGGCAAATGGCCTCAAAGAGGTGAAGACCATACAATTCCTCAAGCACTAATGAGTTTAGATTTGTGGATACTTTTCATAGCAACAACATGTGGATTGGGATCTACAATTACTGCAATTGACAACATGGGACAGATTGGAAAATCCTTGCGATACTCTTCTTTGAGTATAAGCACATTTGTTTCACTTCTGAGCATCTGGAACTTCTTCGGCAGAGTTGGGGCAGGCTTCATCTCTGAAATACTTTTGCACAAGTATTCAGTTCCTAGGCCCTTTTTGCTGAGCCTGGTCCTGTTAGTTGCATCCATAGGTCATCTCCTCATTGCTTCTGCAGTCCCTGGATCCCTTTACATGGCTTCCATTCTCATTGGCATGTGCTTTGGTGCACAATGGCCTCTGCTGTTCTCTATCATCTCCGAACTATTTGGGCTTCGCCCTTTTGCAATTTTATACAATATTGGAGCAAGTGCCAGCCCTCTTGGAGCCTACTTGTTCTCTGTTAGGGTTGCAGGATACTTCTACGATAGGCAAGCAAAGCTTGAAATGTCATCTAGTGATGCTGCAGCTACATCAAATGAAATGTTGTGCGTTGGGAAGCCATGCTTTAAGATAACTTTTTTCATAATGGCAGCAGTTAGCATCGTTGGTTCGGCCATTGCAGCTGTTCTGGTGTACAGAACCAGGCAATTCTACAAGCAAGACATTTATGGGAAATTTAATACAGAGACCCATGACTCGTCATTGTCTGATCAAAAGCCTCTAAATGATTTGAAACGTGAAGAAGCCTGAAATTAGTTGTTATATATGTATTGATGTACCAGTCCAACTGTGATATTAATTACATAAGGTTTCCACAACGACAGAGTGGGACTCACTTCTGTTGTTTCCACTGATCGAAGATCACTGGAAAATTATAGTGTGATCGTAGTTATTATTATGTACTATTTGGCAGTATGGTGAACTAATGTGGGCCTAAGATTCCCCTGTGTGATTAATGGAAAACAGCTTATATGTACTGATTGCTATATTTTTCACGTGCAATACCATTTTCTGCAGTAGCAGCTATGTTACATATCAGAGCGAGTCTTTCGCTTTT

Ace file of the UniGene sp_v3.0_unigene23040 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	major facilitator protein [Arabidopsis thaliana] gb\|AAL31925.1\|AF419593_1 At2g39210/T16B24.15 [Arabidopsis thaliana] gb\|AAC28987.1\| nodulin-like protein [Arabidopsis thaliana] gb\|AEC09646.1\| major facilitator protein [Arabidopsis thaliana]	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Sma3	Nodulin family protein, putative, expressed	-	-	7.274e-17	-

Source	Gene names
Sma3	At2g28120; At2g28120/F24D13.9; At2g39210; GSVIVT00000612001; GSVIVT00012484001; GSVIVT00012949001; GSVIVT00018121001; GSVIVT00018122001; GSVIVT00018125001; GSVIVT00018126001; GSVIVT00018127001; GSVIVT00022162001; LOC_Os03g47810; LOC_Os03g58580; LOC_Os10g0

Source	GOs	Term	Type	Identity
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G39210.1	Major facilitator superfamily protein chr2:16366287-16368231 REVERSE LENGTH=601	47%
RefSeq	Arabidopsis thaliana	NP_181454.1	major facilitator protein [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002326206.1	predicted protein, partial [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: your sequence is shorter than subject: 593 - 626

Fln protein: MGMEAFSNHVIRGLKSRWMMAVACFLILSFAGSNYIFGLYSQTIKINLGYDQEVIDTLAFFKDLGANVGIIAGLINQFGPPWVVLTIGSVMNLTGYLMIWLSVTGKVAKPAMWQMYLYQCIGGSSMTFVNTGIIVTCVKNFPRGRGLVIGLLKGFVGLSGAIITQIYRASVSKDDHPSFLIILAATLPTAIVLLLMPFIRPMEAPKEKNETKNFYIFLAMALALAGFLMVFILLENLLVLPQFVIQLFAAVTILIIFFPLLIVIRSVLQKSDNVVQGDQFNDAFSDRGKSKVELQRSCNDIHSGISVLVTEGNSAENSNEVMVADDDKKLKGKWPQRGEDHTIPQALMSLDLWILFIATTCGLGSTITAIDNMGQIGKSLRYSSLSISTFVSLLSIWNFFGRVGAGFISEILLHKYSVPRPFLLSLVLLVASIGHLLIASAVPGSLYMASILIGMCFGAQWPLLFSIISELFGLRPFAILYNIGASASPLGAYLFSVRVAGYFYDRQAKLEMSSSDAAATSNEMLCVGKPCFKITFFIMAAVSIVGSAIAAVLVYRTRQFYKQDIYGKFNTETHDSSLSDQKPLNDLKREEA*

Protein Length: 594

Fln nts: GAATTTATGATTTTATTTTGCAGCAAAATCGATATCTTTCTTGTTGAAGTTTACATATCATTGTCTCCTGTTAATATACGTATTTTTAGCATTTGTTTGCATTTTCAAGTTTTTGTTGAATCCTGATTTCCATTA_-_ATGGGGATGGAAGCTTTTAGTAATCACGTTATTCGAGGCCTGAAAAGCAGATGGATGATGGCTGTAGCGTGCTTTCTTATTCTCTCGTTTGCTGGATCGAATTATATTTTTGGTTTGTATTCCCAAACTATTAAGATAAATCTGGGATATGATCAGGAGGTGATAGATACATTGGCCTTTTTCAAGGACTTGGGTGCAAACGTGGGCATCATTGCTGGCCTCATCAATCAATTTGGGCCACCATGGGTGGTTCTCACAATTGGTTCAGTGATGAACCTCACTGGATATCTCATGATTTGGCTCTCTGTCACAGGCAAAGTTGCCAAGCCTGCAATGTGGCAGATGTACTTGTATCAATGCATTGGAGGGAGCTCCATGACATTTGTTAATACTGGAATAATTGTGACTTGTGTCAAGAATTTCCCTAGAGGTAGAGGGCTAGTCATTGGGCTGCTCAAGGGGTTTGTAGGTCTAAGTGGTGCTATTATCACTCAGATCTATAGGGCTAGTGTTAGCAAGGATGATCACCCCAGCTTTCTCATAATTTTGGCTGCTACTCTTCCTACTGCTATAGTGCTCCTATTGATGCCTTTCATTCGGCCTATGGAGGCTCCAAAGGAGAAGAATGAGACTAAGAATTTCTATATTTTTCTTGCCATGGCCTTAGCACTGGCAGGCTTTCTAATGGTTTTTATTTTGCTGGAAAACTTGTTGGTACTTCCACAGTTTGTGATTCAGTTGTTTGCTGCAGTAACAATTCTGATAATCTTCTTCCCATTGCTTATAGTCATACGGTCTGTGCTTCAAAAGTCAGACAATGTTGTTCAAGGGGATCAGTTCAATGATGCATTCTCAGATAGAGGGAAGTCTAAGGTTGAACTGCAAAGGTCCTGTAACGATATCCACTCTGGGATATCAGTACTGGTAACAGAAGGCAATTCTGCAGAGAACAGCAATGAAGTCATGGTTGCTGACGATGACAAGAAATTGAAAGGCAAATGGCCTCAAAGAGGTGAAGACCATACAATTCCTCAAGCACTAATGAGTTTAGATTTGTGGATACTTTTCATAGCAACAACATGTGGATTGGGATCTACAATTACTGCAATTGACAACATGGGACAGATTGGAAAATCCTTGCGATACTCTTCTTTGAGTATAAGCACATTTGTTTCACTTCTGAGCATCTGGAACTTCTTCGGCAGAGTTGGGGCAGGCTTCATCTCTGAAATACTTTTGCACAAGTATTCAGTTCCTAGGCCCTTTTTGCTGAGCCTGGTCCTGTTAGTTGCATCCATAGGTCATCTCCTCATTGCTTCTGCAGTCCCTGGATCCCTTTACATGGCTTCCATTCTCATTGGCATGTGCTTTGGTGCACAATGGCCTCTGCTGTTCTCTATCATCTCCGAACTATTTGGGCTTCGCCCTTTTGCAATTTTATACAATATTGGAGCAAGTGCCAGCCCTCTTGGAGCCTACTTGTTCTCTGTTAGGGTTGCAGGATACTTCTACGATAGGCAAGCAAAGCTTGAAATGTCATCTAGTGATGCTGCAGCTACATCAAATGAAATGTTGTGCGTTGGGAAGCCATGCTTTAAGATAACTTTTTTCATAATGGCAGCAGTTAGCATCGTTGGTTCGGCCATTGCAGCTGTTCTGGTGTACAGAACCAGGCAATTCTACAAGCAAGACATTTATGGGAAATTTAATACAGAGACCCATGACTCGTCATTGTCTGATCAAAAGCCTCTAAATGATTTGAAACGTGAAGAAGCCTGA___AATTAGTTGTTATATATGTATTGATGTACCAGTCCAACTGTGATATTAATTACATAAGGTTTCCACAACGACAGAGTGGGACTCACTTCTGTTGTTTCCACTGATCGAAGATCACTGGAAAATTATAGTGTGATCGTAGTTATTATTATGTACTATTTGGCAGTATGGTGAACTAATGTGGGCCTAAGATTCCCCTGTGTGATTAATGGAAAACAGCTTATATGTACTGATTGCTATATTTTTCACGTGCAATACCATTTTCTGCAGTAGCAGCTATGTTACATATCAGAGCGAGTCTTTCGCTTTT

Fln Alignment:

Contig23040___RWMMAVACFLILSFAGSNYIFGLYSQTIKINLGYDQEVIDTLAFFKDLGANVGIIAGLINQFGPPWVVLTIGSVMNLTGYLMIWLSVTGKVAKPAMWQMYLYQCIGGSSMTFVNTGIIVTCVKNFPRGRGLVIGLLKGFVGLSGAIITQIYRASVSKDDHPSFLIILAATLPTAIVLLLMPFIRPMEAPKEKNETKNFYIXXXXXXXXXXXXMVFILLENLLVLPQFVI-QLFAAVTXXXXXXXXXXXIRSVLQKSDNVVQGDQFNDAFSDRGKSKVELQRSCNDIHSGISVLVTEGNSAEN------------SNEVMVADDDKKLKGKWPQR----------------------------GEDHTIPQALMSLDLWILFIATTCGLGSTITAIDNMGQIGKSLRYSSLSISTFVSLLSIWNFFGRVGAGFISEILLHKYSVPRPFLLSLVLLVASIGHLLIASAVPGSLYMASILIGMCFGAQWPLLFSIISELFGLRPFAILYNIGASASPLGAYLFSVRVAGYFYDRQA-----------KLEMSSSDAAATSNEMLCVGKPCFKITFFIMXXXXXXXXXXXXXXVYRTRQFY
B8LRH5_______________KWVGFVTAIWVQAIAGNNYTFSNYSVALKSILDVNQVQLNNLSVAKDVGKAFGLVAGFASDYLPAWLILLIGSLEGFLGYGAQWLVLSQRIRPLPYWQMCIFLCMGGNSTTWMNTAVLVTCMRNFRRNRGPVVGILKGYIGLSTAIFTDLCSALFASS--PSSFVLMLTLIPGIVCVTSMIFLRPVPCSADEREEKEEAQSFSTFNVIAITVAVYLLAFDITGKHGIVLSRTFAGFLLVLLAAPLVVPLKLFIKEKNS--RGEQLIPSFWKWKSANTQFLDIEKQVREPLLTNVEEAKGAENPETSVQAKAESIATEPRPSQSESVATEPWPSQSESVTTEPRPSQSESVENQIVCNSKPRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMGF--VDVSMFVSLISIWGFFGRIGAGSISEHFIRKAGVPRPVWMAASQLFMIVGYIFMAIGMPGSLYLGSIVVGVCYGVRLSISVPTASELFGLKYYGMIYNFLILNLPIGSFLFSGLLAGILYDIEAAKSHKVNARPYPVLLSGIYPSELEDSNNCVGAHCYRLVFLVMAGVCLLGFGLDVLLSFRTRNLY

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
698		42		57	1.0
751	14		85		0.993533
946			75	25	1.0
1014		11	88		0.923564
1016		12		87	0.992554
1091	14		85		0.993533
1093	14	85			0.993533
1096		16		83	0.994512
1218			75	25	0.996473
1272			33	66	0.997452
1615	12		87		0.992554
1631		12	87		0.992554
1649	11	88			0.923564
1651	11	88			0.923564
1700	75	25			1.0
1713	12		87		0.992554
1738	85		14		0.993533
1798	75	25			0.996473
1799		25	75		0.996473
1876	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain