SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22934

Length: 1451 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene22934 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Plastid-lipid-Associated Protein (Fragment) n=1 Tax=Nicotiana tabacum RepID=O24141_TOBAC	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	structural molecule activity	GO:0005198	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Plastid lipid-associated protein/fibrillin conserved domain	IPR006843	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G22240.1	Plastid-lipid associated protein PAP / fibrillin family protein chr4:11766090-11767227 REVERSE LENGTH=310	64%
RefSeq	Arabidopsis thaliana	NP_193955.1	putative plastid-lipid-associated protein 2 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002331570.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZP9

Fln msg:

Fln protein: MAAISAFSAHHYANSSASAQSTTGSKPAASAISAVGFAAPKPPNRMITLSSRPLSIFDARGSRKTSFRVFSVDAESELSGGNNGEAAPSTDTATVVDEEPSEMKDLKRALVDSFYGTDRGLRASSETRAEIVELITQLEAKNPTPAPTEALNLLNGKWILVYTSFSEIFPLLATGTLPLLKVQEISQKIDSETLTVENSVQFAGPLATTSFSTNATFEVRSPKRVQIKFEEGIISTPQLIDAIEIPENVEVLGQKVDLAPFRGLITSAQNAASSVVKRISEQPPIKFPIRTDRAQSWLLTTYLDKDLRISRGDGSSVFVLIKEGSPLLPLY*

Protein Length: 333

Fln nts: ACATGGGGGGATGGAGGGGAGGAATTTCCGTGGAAGATTCTGGGTGCTTGAACGTTGAGAGAAACCCTTACGAGTACCAGGAAGCGACGACTCGAAAATTTGTTGGCCTTCTGCAGCGTTTCAAGGATTCAAGAATAATCAAGCATCACCGTTCTTGAAGGCTGATAGGGCTTCACTCACTCGATAAACTTAAGTC_-_ATGGCGGCGATTTCTGCATTTTCTGCGCATCATTATGCAAATAGTTCAGCCTCGGCACAATCGACCACAGGTAGTAAACCGGCAGCCTCCGCCATCTCCGCGGTTGGATTTGCAGCACCTAAGCCACCGAATCGTATGATTACTCTTTCTTCCAGGCCTTTAAGCATATTCGATGCACGGGGATCCAGGAAGACAAGTTTCAGAGTATTTTCGGTCGATGCGGAGAGTGAACTCTCTGGGGGAAACAACGGCGAAGCGGCTCCTAGCACAGACACTGCTACAGTTGTTGACGAGGAGCCCAGTGAAATGAAAGATTTGAAGCGTGCTTTGGTGGATTCATTCTACGGTACTGACAGGGGATTGAGGGCTAGCAGTGAAACAAGGGCTGAAATTGTAGAGTTAATTACCCAACTGGAAGCCAAAAACCCTACTCCAGCACCTACAGAGGCCCTCAATCTCCTCAATGGCAAATGGATCCTAGTGTATACATCCTTCTCCGAGATATTCCCATTGCTTGCTACAGGGACTTTGCCGTTGTTGAAGGTTCAGGAAATTTCTCAAAAAATTGATTCGGAGACTTTGACAGTGGAGAACTCTGTGCAATTTGCAGGACCTCTGGCTACCACATCCTTTAGTACAAATGCAACTTTCGAAGTGCGGAGTCCCAAGCGAGTGCAGATAAAGTTCGAAGAAGGAATAATAAGCACACCCCAGCTTATAGATGCTATCGAGATTCCAGAAAATGTGGAAGTTTTAGGGCAAAAGGTTGATCTGGCTCCCTTTCGAGGACTAATCACTTCAGCTCAGAATGCTGCATCTTCAGTAGTGAAACGTATATCTGAGCAACCCCCTATCAAGTTTCCAATCCGAACTGACAGGGCACAGTCTTGGCTGTTGACAACTTACTTGGATAAAGACTTGAGAATTTCTAGAGGTGATGGAAGCAGTGTTTTTGTGCTTATCAAGGAAGGCAGCCCTTTACTGCCCCTATATTAG___AGACTTCAATCTTTCAAGGTAATGGCAGTAGTAATTCGTGTTTACCAGGAACGAAGCACTTGAATGCCTCTACTACTGGTTAAAATTTTCCAATCTTTCTTTCTTCTGCTTTCAATAAGTCATTTGTGTGACTAGTTAGCTGAAATTCTTTTATGGAAAGAGAAACAAATGTAATTATATTATAAATTTGCATAACACGTTAATAATATTAATGTGTTCACATTAATATTAATGGAAATATTTAAGATATTAATAATAG

Fln Alignment:

Contig22934___TTGSKPXXXXXXXXXXXAPKPPNRMITLSSRPLSIFDARGSRKTSFRVFSVDAESELSGGNNGEAAPSTDTATVVDEEPSEMKDLKRALVDSFYGTDRGLRASSETRAEIVELITQLEAKNPTPAPTEALNLLNGKWILVYTSFSEIFPLLATGTLPLLKVQEISQKIDSETLTVENSVQFAGPLATTSFSTNATFEVRSPKRVQIKFEEGIISTPQLIDAIEIPENVEVLGQKVDLAPFRGLITSAQNAASSVVKRISEQPPIKFPIRTDRAQSWLLTTYLDKDLRISRGDGSSVFVLIKEGSPLLP
A9NZP9_______________TSGSKPAASAISAVGFAASKPSNHVITLSSRPLSIFHAWGSRRTNFRVFAIDAEDEWSGGKNGEEAPSTVTATVVEEEPSEMKDLKRALVDSFYGTDRGLRASSETRAEIVELITQLEAKNPTPAPTEALNLLNGKWILVYTSFSELFPLLATGTLPLVKVQEISQKFDSGTLTVENSVQFAGPLATTSFSTNASFEVRSPKRVQIKFEEGVISTPQLTDAIEIPESVEVLGKKIDLAPFKGLISSVQNAASSVVKSISERPPIKFPIRTERAQSWLLTTYLDEDLRISRGDGSSVFVLIKEGSPLLP

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
541			71	28	1.0
1011			48	52	1.0
1128			80	20	1.0
1183			81	18	1.0
1351	88	11			0.999952
1352	82	17			1.0
1380		66		33	1.0
1424		10	90		0.999898
1425	90	10			0.999898
1426	90	10			0.999898
1437		8		33	1.0
1440	63			18	0.999997

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain