SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22927

Length: 1781 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene22927

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Similar to ribokinase [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	ribokinase activity	GO:0004747	Molecular Function	0.0	-
Sma3	D-ribose metabolic process	GO:0006014	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate/purine kinase	IPR011611	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Ribokinase	IPR002139	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G17160.1	pfkB-like carbohydrate kinase family protein chr1:5867678-5869215 FORWARD LENGTH=379	65%
RefSeq	Arabidopsis thaliana	NP_173159.1	ribokinase [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002317476.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK35

Fln msg:

Fln protein: MSNSTRPTDLPVVVVGSANADIYVEIDRVPKEGETIAARGGQTLAGGKGANQAACAGKLSHPTYFIGQVGKDAHGSLVKDALSSCGVRIDYLNTVSDPTGHAVVLLQPGGKNSIIVVGGANVSWPILEDGMNCLSANAQQIIREAGIVLLQREVPDSLNLEVAKIARSANVPVILDAGGMEGPIPENLLKCIDIFSPNETELERLTGASTNTIDQVIEAAAKCHEMGVKQVLVKLGEKGSVLVTEGLPPILQPAILAPMVLDTTGAGDTFTAAFAVALVERNSVAESLKFAAAAASLCIQVKGAIPSMPDRNAVLQLLKSTCSSAD*

Protein Length: 328

Fln nts: CTGCCCACATCACTATTGCGGCACTCCTACGCGGATCACGTGATTAACATACGTCCGTCTCTATTAAACAGTGTTGCTCTTTCGTTTTCATTCCTCCGATAGTCGTTAGTTGTATCTGAGAATTCGGAATTCAGG_-_ATGTCGAATTCGACGAGGCCTACGGATCTCCCTGTGGTGGTAGTGGGATCTGCCAATGCAGACATATATGTTGAAATTGACAGGGTTCCCAAGGAAGGCGAGACGATCGCTGCGAGGGGAGGTCAGACACTCGCGGGAGGGAAGGGGGCCAACCAGGCTGCCTGTGCTGGAAAACTTTCTCACCCCACTTACTTCATTGGTCAGGTAGGAAAAGACGCACATGGATCACTTGTGAAGGATGCATTAAGCTCTTGTGGTGTCCGGATTGACTACTTAAACACGGTTTCAGATCCTACAGGCCATGCTGTTGTCCTGCTGCAACCTGGTGGAAAAAACTCTATTATTGTTGTTGGAGGTGCTAATGTTTCATGGCCAATTTTAGAAGACGGTATGAATTGTCTCTCTGCCAATGCTCAGCAAATAATCCGTGAAGCAGGCATTGTGCTTTTGCAAAGGGAAGTTCCGGACAGTTTGAATCTTGAAGTTGCAAAGATTGCAAGAAGTGCAAATGTTCCAGTGATTCTAGATGCTGGAGGCATGGAAGGGCCAATTCCCGAGAACCTGCTTAAATGCATTGACATTTTTAGTCCAAATGAAACTGAGCTGGAACGCCTGACAGGAGCTTCTACCAATACAATTGATCAAGTTATCGAAGCTGCAGCCAAATGTCATGAAATGGGTGTCAAACAAGTTCTGGTAAAATTGGGAGAAAAAGGATCAGTTTTAGTGACGGAAGGTCTTCCTCCAATCCTACAGCCTGCAATTCTTGCTCCCATGGTACTGGACACAACAGGAGCAGGTGATACTTTCACAGCTGCATTTGCTGTGGCCCTTGTGGAAAGAAATTCAGTGGCAGAGAGCCTGAAGTTTGCAGCTGCAGCGGCATCGTTATGCATTCAAGTTAAAGGTGCCATTCCAAGTATGCCTGATAGAAATGCAGTTTTGCAACTTCTGAAATCTACGTGTTCTTCTGCAGACTAA___GGCGATTCACAATAGATTTAGTGTATTACATTAAACTGCTTAAATATATAAGCTCCAGAGTCCAAACTGACTCATCAAGGGCTGCTTTTAGGAGTAACTGCCTTTAGGAGTAAATTTACTTTACTGACAGAGCTTTGTAAAGAACCTTTATGAGTTTATGAGTTACAGCAGACACTCTCTAGGTTGCTTTAGTTAAGCACTTTTATTTACAACTTATCAGCAAAGTATGACACTCGTTATACATGTTGTCATTTCTTCATCGTGATTCCAGTCTGTTTCTCTTCTTCCCGATAATGGATATTTTTATGTTATTTGCAAAGGCAATTGCTGAACGCTGCTTGTGGTGTAATATCCCTTGCTTGCGGAGAGGACTTAGCTAGAGTACGTTCATGATGTAAATTTAGATGTCATTGAAACATTTAACATCTCTGTCTATGGATATTACTGGCTGATGATTGAGCTAGTTTTGTCTAGATGAGACACACAGTAATAGGGATGAATAATAAACATGATGACCAAGGTTTGGACATTTTTGACTCTCAATCAGGCACACCTCACGACACTACAAAAATAATCAGGTCCATATTCTCTGCTAATTGATCTGTTTTCCATCGAATCCCACTCTCGTGTGCTTGTTCCCTGATACTGTGTATTTGGCTTATAAC

Fln Alignment:

Contig22927___MSNSTRPTDLPVVVVGSANADIYVEIDRVPKEGETIAARGGQTLAGGKGANQAACAGKLSHPTYFIGQVGKDAHGSLVKDALSSCGVRIDYLNTVSDPTGHAVVLLQPGGKNSIIVVGGANVSWPILEDGMNCLSANAQQIIREAGIVLLQREVPDSLNLEVAKIARSANVPVILDAGGMEGPIPENLLKCIDIFSPNETELERLTGASTNTIDQVIEAAAKCHEMGVKQVLVKLGEKGSVLVTEGXXXXXXXXXXXXMVLXXXXXXXXXXXXXXVALVERNSVAESLKFXXXXXSLCIQVKGAIPSMPDRNAVLQLLKSTCSSAD
A9NK35_______________MSNPTRATDLPVVVVGSANADIYVEIDRLPKEGETIAARGGQTLAGGKGANQAACAGRLSHPTYFVGQVGKDAHGSLMKDALSSCGVRLDYLNTVSDPTGHAVVMLQPGGQNSIIIVGGANVSWPILEDGMSCLSANAQQIIREAGIVLLQREVPNSLNLEVAKIARSANVPVILDAGGMEGPIPENLLKCIDIFSPNETELERLTGASTNTIDEVIEAAAKCHEMGVKQVLVKLGEKGSVLVTEGLPPILQPAILAPMVLDTTGAGDTFTAAFAVALVEGNSVAESLRFAAAAASLCIQVKGAIPSMPDRNAVLQLLKSVCSSAD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1560	60		40		1.0
1597		87		12	0.992554
1633	16	66	16		0.988813
1634	83			16	0.994512
1635	83			16	0.994512
1684	66		33		0.997452
1700	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain