SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22917

Length: 1376 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene22917

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Non-symbiotic hemoglobin, putative n=1 Tax=Ricinus communis RepID=B9RZD8_RICCO	-	-	0.0	60%
FL-Next	sp=Non-symbiotic hemoglobin 1; Medicago sativa (Alfalfa).	-	-	0.0	68%
Sma3	Non-symbiotic hemoglobin 2	-	-	3.374e-24	-

Source	Gene names
Sma3	AHB1; AHB2; At2g16060; At3g10520; B1130G10.18; F13M14.20; F18K10.9; F7H1.8; GLB0; GLB1; GLB1A; GLB1B; GLB1C; GLB1D; GLB2; GSVIVT00001609001; GSVIVT00036442001; GSVIVT00036443001; GSVIVT00038047001; Glb1; HB; HB1; HB2; HB3; HB4; HBII; Hb; Hb1; Hb2; LB1; LB

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	nuclear matrix	GO:0016363	Cellular Component	-
Sma3	oxygen transporter activity	GO:0005344	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	oxygen binding	GO:0019825	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to hypoxia	GO:0001666	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	nitrogen fixation	GO:0009399	Biological Process	-
Sma3	oxygen transport	GO:0015671	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Globin, subset	IPR000971	-	-
Sma3	Leghaemoglobin	IPR001032	-	-
Sma3	Globin, structural domain	IPR012292	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G16060.1	GLB1, AHB1, ARATH GLB1, NSHB1, ATGLB1, HB1 hemoglobin 1 chr2:6982782-6983522 REVERSE LENGTH=160	61%
RefSeq	Arabidopsis thaliana	NP_179204.1	non-symbiotic hemoglobin 1 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002313074.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FVL0

Fln msg: your sequence is longer than subject: 241 - 160

Fln protein: MAPICQHLIIDGTIKGQLLSVPRHKDLCSLKANCDGGEIFGVRWSKTQRTGDTSMMLRKSPFRLTSSNWSRGIVSRRSRITNVRARAFTEEQEALVKKSWNAMKSNAAELGFRFFLRVFEIAPSAKRLFSFLHDTDVPIEKNAKLKAHALTVFKMTCESAIQLREKGTATFSESNVKDLGKLHFKYGVVDEHFDVVKFCLLETIKDAVPDIWSLEMKTAWDEAYTQLAEAIKSEMKTVQP*

Protein Length: 242

Fln nts: ACGCATACTCTATATATAGTCGACGATGCTTGAATAACACAATATTTACGGCACAAGCGCGTCGGATCTGACTTCAGTTTCACCCTGTAAGCAAAAACTTCGAGCATAATGGCTGCAGTTTATTCTATTGCTGTCTTGCCCA_-_ATGGCACCAATATGTCAGCATCTCATAATTGATGGAACGATCAAAGGGCAACTTCTTTCGGTTCCGAGGCACAAGGATTTATGTAGCTTGAAAGCCAATTGTGATGGAGGAGAAATATTTGGCGTCCGGTGGAGTAAAACCCAAAGAACTGGAGACACCTCAATGATGTTACGAAAATCTCCCTTCAGATTGACAAGTAGTAACTGGAGCCGTGGTATAGTCAGTAGGAGGAGCAGAATTACAAATGTCCGGGCGAGGGCTTTTACGGAGGAGCAAGAAGCCCTAGTTAAGAAATCATGGAATGCCATGAAATCAAATGCTGCCGAACTGGGGTTTAGGTTCTTTCTAAGAGTGTTTGAGATTGCGCCTTCAGCCAAACGGCTATTCTCGTTTTTACATGATACTGACGTCCCAATCGAAAAGAATGCAAAGCTTAAGGCACATGCTCTCACAGTTTTCAAAATGACTTGTGAATCTGCCATTCAACTACGAGAGAAAGGAACGGCAACATTCTCAGAATCAAACGTCAAGGACTTGGGGAAGCTTCATTTTAAATATGGAGTAGTTGATGAACATTTTGATGTTGTTAAATTCTGCTTGCTCGAGACTATTAAGGATGCTGTTCCGGACATATGGTCTCTAGAAATGAAAACTGCCTGGGATGAAGCCTATACCCAATTGGCTGAAGCTATCAAAAGCGAAATGAAGACTGTGCAACCATGA___GTGCCCTGATATTGTTGCTGAGTATTGACAAAGTCTTGGCAACTAATCCCTCGGCGGTATTTAAGATATTGGATTATGACGTTTCAAGAGATGATAAAAGTCTATTTCTTGATAACCTGAAGAACTTGTGGAAAGATATTATTAGTTGTTCATAACCAGTAATAGACCTCAATGTCTGAAGATGGTTGTCATTGAGATTTATGAGAAGTAATTAAGAACCCTCATAACCATAATTGGCTCCTATCAGCTATACATAACGCCCTCGGTCATTGTTCTAAGATTCCTTCGTAGATTTTACACCTGTTATAGAGTCCTGAAAATAAGGAGGTACCTTTGCGCCCAGATTTCCATAAATTGCATCAGATTCAATTTTTGGGTAAAACCCCTGTAGATTGTAAAGAGCTTTACTCACATAGATTGGGTTAATAATCTTATTGTCCTTAATTACAGTTCTTTGAACAATCATGTCACGGAATATTGGGCTGGTAATGCTATTGTTCTTAGTTATTTG

Fln Alignment:

Contig22917___RAFTEEQEALVKKSWNAMKSNAAELGFRFFLRVFEIAPSAKRLFSFLHDTDVPIEKNAKLKAHALTVFKMTCESAIQLREKGTATFSESNVKDLGKLHFKYGVVDEHFDVVKFCLLETIKDAVPDIWSLEMKTAWDEAYTQLAEAIKSEMK
Q9FVL0_______________KGFTEEQEALVVKSWNAMKKNSAELGLKLFLKIFEIAPSAQKLFSFLKDSKVPLEQNTKLKPHAMSVFLMTCESAVQLRKSGKVTVRESSLKKLGANHFKYGVVDEHFEVTKFALLETIKEAVPEMWSPAMKNAWGEAYDQLVNAIKSEMK

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1033	33		66		1.0
1053	33		66		0.997452
1060		33		66	1.0
1090	33			66	1.0
1102		14		85	0.993533
1109		85	14		0.993533
1119		14		85	0.993533
1133		33	66		1.0
1143		50		50	1.0
1150		33		66	1.0
1188	73		26		1.0
1192		33	66		1.0
1200	40	60			1.0
1206	40		60		1.0
1207		66	33		1.0
1217		60		33	1.0
1225		21	78		1.0
1267	58			41	1.0
1280		72		27	1.0
1285	81		18		0.999994
1311	66		33		1.0
1313			12	87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain