SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22914

Length: 1005 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene22914

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative receptor-like protein kinase [Oryza sativa Japonica Group]	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Putative Receptor-like serine/threonine kinase(RFK1)	-	-	1.234e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	1.464e-13	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	4.321e-07	-

Source	Gene names
Sma3	24K23.9; AT1G07650; AT1G53420; AT1G53430; AT1G53440; AT1G56145; AT3G14840; At1g16670; At1g56145; At1g70530; At5g40380; CRK3; CRK42; F14G9.24; F19K19.4; F24B9.29; F24J13.10; GSVIVT00002759001; GSVIVT00002761001; GSVIVT00002762001; GSVIVT00016037001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Transcription regulator LuxR, C-terminal	IPR000792	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	-
Sma3	Glycoprotein D/GG/GX, Herpesvirus	IPR002896	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G16670.1	Protein kinase superfamily protein chr1:5697846-5699492 FORWARD LENGTH=390	51%
RefSeq	Arabidopsis thaliana	NP_564003.1	kinase domain-containing protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002324661.1	predicted protein, partial [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLL8

Fln msg:

Fln protein: MSNNSLDKHLFGEIRNPLCWENRLNIIVGTARGLAYLHEESNVRIIHRDIKCPNILLDDSLHPKIADFGLARFFPESQTHVSTRVGGTIGYTAPEYAVHGQLTEKADIYSYGIVVLEIVSGRKCVDARLPAPRQLLLEWAWNLFEQNKVLDIVDPLLEGQYQREEVLRVITVALLCTQGSWTQRPAMPQVVSMLTNNSERIVEPTRPAFIDAAADRRQNSPSIPESAIQAAAPTPASHGSISVSLLPR*

Protein Length: 250

Fln nts: GTTAAGAAGCTTACTGGAAAGCACACTACTCAAGCTGATGAAGAATTTCTAACCGAAGTGAAGCTGATCAGCAGCGTCCGTCACCGTAATCTTGTTTGTTTACTTGGATGTTGCAAGCGAGGGCACAAACGCTTGCTGGTTTACGAATTT_-_ATGTCAAATAACAGTCTTGACAAACATTTGTTCGGCGAGATAAGAAATCCTTTGTGCTGGGAAAACCGATTAAACATTATAGTGGGCACAGCACGAGGCCTTGCATACCTGCACGAGGAATCCAACGTTCGCATTATACACAGAGACATCAAATGTCCAAATATACTTCTGGATGACAGCCTTCATCCCAAAATTGCAGATTTTGGATTGGCTAGATTTTTCCCAGAAAGCCAAACACATGTTTCTACCAGAGTGGGAGGAACAATAGGCTACACTGCACCCGAATATGCGGTTCATGGGCAATTAACGGAAAAAGCTGACATTTATAGTTATGGGATCGTGGTTCTTGAGATCGTGAGTGGGAGAAAGTGCGTGGATGCAAGACTGCCCGCCCCTCGTCAGCTTCTTCTAGAATGGGCATGGAATCTGTTCGAGCAGAATAAAGTTTTGGATATTGTGGATCCATTGTTAGAGGGGCAGTACCAAAGAGAGGAAGTGCTAAGAGTGATTACTGTAGCACTTCTATGCACCCAAGGCTCATGGACGCAACGACCGGCAATGCCACAGGTTGTGTCGATGTTAACCAACAATTCAGAGAGAATTGTTGAGCCCACACGACCAGCTTTTATAGATGCCGCTGCAGACAGACGCCAGAATTCCCCTTCGATACCCGAATCTGCGATCCAAGCTGCTGCTCCAACTCCGGCATCTCATGGATCTATCAGCGTCTCTTTACTTCCCCGTTAA___ACGGAACGGTGTTTATCTTTTTACAGTCTGCTACTTCGCTGTTGAAACTAGCTTTGATGCAGGCACAGCAAGAAGGTTTTTAAACTAGGACGTTCGAGGTTCGATCCC

Fln Alignment:

Contig22914___MSNNSLDKHLFGEIRNPLCWENRLNIIVGTARGLAYLHEESNVRIIHRDIKCPNILLDDSLHPKIADFGLARFFPESQTHVSTRVGGTIGYTAPEYAVHGQLTEKADIYSYGIVVLEIVSGRKCVDARLPAPRQLLLEWAWNLFEQNKVLDIVDPLLEGQYQREEVLRVITVALLCTQGSWTQRPAMPQVVSMLTNNSERIVEPTRPAFIDAAADRRQNSPSIPESAIQAAAPTPASHGSISVSLLPR
B8LLL8_______________MSQNSLHKHLFGEIQNVLSWEKRLGIIVGTARGLTYLHEDSNVRIIHRDIKCGNILLDDRFHPKIADFGLARFFPDGETHVSTRVGGTIGYTAPEYAVHGQLTEKADVYSYGIVVLEIVSGRKSVNARLDASMQLLLEWAWNQFQQDQVLDIVDSSLEGQYPREQVLRVIRIALLCTQGSWALRPAMSEVVSMLTNNSEITVQPTQPAFIDDSAGKPTDFTTPSDSVNLRSA---SSHGSITVSFVPR

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
592	40	60			1.0
593	60		40		1.0
662		75	25		0.996473
712		33		66	1.0
729	33		66		1.0
745		33	66		1.0
754	11		88		0.923564
784		11	88		0.923564
803	66	33			1.0
804	33		66		1.0
811	62	37			1.0
830	37	62			1.0
833		62		37	1.0
852	12			87	0.992554
856	62		37		1.0
877	62		37		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain