SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22902

Length: 1080 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene22902 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myb-like protein P [Fagopyrum cymosum] gb\|ABP57070.1\| Myb-like protein P [Fagopyrum cymosum]	-	-	3.9937e-43	75%
FL-Next	tr=MYB-like protein; Taxus globosa.	-	-	0.0	73%
Sma3	MYB transcription factor	-	-	1.2e-08	-

Source	Gene names
Sma3	At1g22640; At2g16720; At2g47460; At3g13540; At4g38620; At5g14750; At5g35550; At5g49330; At5g52600; C; C1; C1-B73; C1-I; DcMYB3-1; DcMYB3-2; DcMYB5; F12K8.1; F20M13.180; F6N7.8; FcMYB251; FcMYB558; GSVIVT00002010001; GSVIVT00006679001; GSVIVT00009522001; G

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	cinnamic acid biosynthetic process	GO:0009800	Biological Process	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	negative regulation of metabolic process	GO:0009892	Biological Process	-
Sma3	proanthocyanidin biosynthetic process	GO:0010023	Biological Process	-
Sma3	trichome morphogenesis	GO:0010090	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3	cell fate commitment	GO:0045165	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	mucilage biosynthetic process involved in seed coat development	GO:0048354	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G35550.1	TT2, ATMYB123, MYB123, ATTT2 Duplicated homeodomain-like superfamily protein chr5:13726807-13727729 FORWARD LENGTH=258	71%
RefSeq	Arabidopsis thaliana	NP_198405.1	transcription factor TT2 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002303999.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1024			83	16	1.0
1026	82			17	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain