SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22865

Length: 828 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene22865 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=A9PLA3_POPTR	-	-	7.0e-31	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	RAP2-like protein	-	-	2.87e-15	-

Source	Gene names
Sma3	AP22.2; At1g19210; At1g74930; At2g23340; At4g31060; At4g36900; At5g21960; B1172G12.12; B1172G12.5; C-EF8; C7A10.460; DREB1; DREB36; DREB37; DREB38; DREB44; DREB45; DREB46; DREB47; ERF008; ERF009; ERF015; ERF016; ERF017; ERF018; F25A4.10; F9E10.22; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3		IPR001476	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Chaperonin Cpn10, conserved site	IPR018369	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G21960.1	Integrase-type DNA-binding superfamily protein chr5:7258560-7259210 REVERSE LENGTH=216	2.0e-36	67%
RefSeq	Arabidopsis thaliana	NP_680184.1	ethylene-responsive transcription factor ERF016 [Arabidopsis thaliana]	2.0e-36	67%
RefSeq	Populus trichocarpa	XP_002308508.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	5.0e-39	52%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
482	10		90		0.90298
483	10		90		0.90298
485	90	10			0.90298
486		10	90		0.90298
487	10	90			0.90298
488	10			90	0.90298
489	10			90	0.90298
502		88		11	0.923564
507			88	11	0.923564
510	11	88			0.923564
514	88	11			0.923564
515		11	88		0.923564
519	87			12	0.992554
520	85		14		0.993533
521			14	85	0.993533
523		14		85	0.993533
524	14			85	0.993533
525		16	83		0.994512
527	16	83			0.994512
529		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain