SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22841

Length: 554 nt

UniGene Fasta

>sp_v3.0_unigene22841
CTCTCCAACTGCCTTGGGAGCAAGAAGTTCGGTTCATATTCGCCGTGGATGCTCGAACCAAATTCGATCCGCCGCTTCCTAAAGGCTTCTACGGCAATGCTTTCAGCCCTGCGTGCGCAAAGATGACCGCAGGAGAGCTGTTAAACCAACCGCTGTCTTTCGCTGTGAAAGAGATAAACAAAGCGAAAACGGCTGTGAACGACGAGTACATGCGATCAGTGATAGATTTGATGGAAATAGAAGGGCGCCCTAACTTTACAGTGGTGGGATCCTTTATCGTTTCGGACGTTACCAAAATCGGTCTTGAGGATGTGGATTTCGGATGGGGAAGAGCGGCGTTCGGAGGGCCTGCAAAGTGTGGAGTGGGATTTCCAGGCTTGAGCTTCTTCATCCCCTACCGAAATACAAGTGGGGTGCAAGGGATATTGGTTCCCGTTTGCTTGCCCCCTGCTGCTATGGAAAGACTTGAAGCAGAAATAACTGAAGCCACGAAGAAGTCCGCTCCTCCTTTTCTATAGGAACGAAATAGCCTAGTCTAAGTCTTCTATAATTTG

Ace file of the UniGene sp_v3.0_unigene22841

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative alcohol acyl-transferases n=1 Tax=Cucumis melo RepID=Q5I2Q5_CUCME	-	-	2.8026e-45	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Benzoyl coenzyme A: benzyl alcohol benzoyl transferase	-	-	3.384e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Taxadien-5-alpha-ol O-acetyltransferase.	EC:2.3.1.162	-	1.76e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Diterpenoid biosynthesis	00904		1.76e-07	%

Source	Gene names
Sma3	AAT; AAT3; AT2; At5g17540; CtAT23; GSVIVT00013875001; GSVIVT00025220001; GeAAT-1; HCQL2; K10A8_20; LOC_Os10g35950; OSJNBb0041B22.105; OSJNBb0073N24.11; Os06g0710700; Os07g0550600; Os10g0503300; OsI_24425; OsI_26418; OsI_34226; OsJ_24673; OsJ_32078; P0534A

Source	GOs	Term	Type	e value	Identity
Sma3		GO:0008415	Molecular Function	0.0	-
Sma3	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transferase	IPR003480	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G17540.1	HXXXD-type acyl-transferase family protein chr5:5782061-5783682 REVERSE LENGTH=461	3.0e-40	47%
RefSeq	Arabidopsis thaliana	NP_197256.1	HXXXD-type acyl-transferase-like protein [Arabidopsis thaliana]	4.00001e-40	47%
RefSeq	Populus trichocarpa	XP_002325454.1	predicted protein [Populus trichocarpa]	0.0	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLR5

Fln msg: your sequence is shorter than subject: 172 - 448

Fln protein: LQLPWEQEVRFIFAVDARTKFDPPLPKGFYGNAFSPACAKMTAGELLNQPLSFAVKEINKAKTAVNDEYMRSVIDLMEIEGRPNFTVVGSFIVSDVTKIGLEDVDFGWGRAAFGGPAKCGVGFPGLSFFIPYRNTSGVQGILVPVCLPPAAMERLEAEITEATKKSAPPFL*

Protein Length: 173

Fln nts: CTCTCCAACTGCCTTGGGAGCAAGAAGTTCGGTTCATATTCGCCGTGGATGCTCGAACCAAATTCGATCCGCCGCTTCCTAAAGGCTTCTACGGCAATGCTTTCAGCCCTGCGTGCGCAAAGATGACCGCAGGAGAGCTGTTAAACCAACCGCTGTCTTTCGCTGTGAAAGAGATAAACAAAGCGAAAACGGCTGTGAACGACGAGTACATGCGATCAGTGATAGATTTGATGGAAATAGAAGGGCGCCCTAACTTTACAGTGGTGGGATCCTTTATCGTTTCGGACGTTACCAAAATCGGTCTTGAGGATGTGGATTTCGGATGGGGAAGAGCGGCGTTCGGAGGGCCTGCAAAGTGTGGAGTGGGATTTCCAGGCTTGAGCTTCTTCATCCCCTACCGAAATACAAGTGGGGTGCAAGGGATATTGGTTCCCGTTTGCTTGCCCCCTGCTGCTATGGAAAGACTTGAAGCAGAAATAACTGAAGCCACGAAGAAGTCCGCTCCTCCTTTTCTATAG___GAACGAAATAGCCTAGTCTAAGTCTTCTATAATTTG

Fln Alignment:

Contig22841___LQLPWEQEVRFIFAVDARTKFDPPLPKGFYGNAFSPACAKMTAGELLNQPLSFAVKEINKAKTAVNDEYMRSVIDLMEIEGRPNFTVVGSFIVSDVTKIGLEDVDFGWGRAAFGGPAKCGVG-FPGL-SFFIPYRNTSGVQGILVPVCLPPAAMERLEAEITEATKKSAPPFL
B8LLR5_______________LQLPSEQEVRLIFPLDARTRFDPPLPKGFYGNAISFACAKTTAGELAKNPLSFALKLINEAKTAVNDEYMRSVIDLMELEGRPHFTVVGSFLVSDVTKIGFGDVDFGWGRAAYGGPAKGGVGAVPGVSSFFIPLRNTSGVEGILVPVCLPSAAMKIFQAEISEATEKYAPPFL

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
102	25			75	0.996473
105	75		25		0.996473
108		75		25	0.996473
109		75		25	0.996473
113	25		75		0.996473
141			25	75	0.996473
142		25		75	0.996473
175			16	83	0.994512
252	90	10			0.90298
276	90	10			0.90298
307	87		12		0.992554
323	87	12			0.992554
326	12		87		0.992554
348	14	85			0.993533
357			14	85	0.993533
379			14	85	0.993533
384			14	85	0.993533
444		75	25		0.996473
465		90		10	0.90298
477	90		10		0.90298
481	10	90			0.90298
501	12		87		0.992554
514			12	87	0.992554
529		12	87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain