SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22837

Length: 1311 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene22837

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nodulin MtN3-like protein [Arabidopsis thaliana] sp\|Q9LH79.1\|SWET2_ARATH RecName: Full=Bidirectional sugar transporter SWEET2; Short=AtSWEET2 dbj\|BAB02642.1\| MtN3-like protein [Arabidopsis thaliana] gb\|AAL06889.1\| AT3g14770/T21E2_2 [Arabidopsis thaliana]	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Seven-transmembrane-domain protein 1	-	-	7.771e-15	-

Source	Gene names
Sma3	At1g21460; At3g14770; At5g53190; B1065E10.2-1; F24J8.9; GSVIVT00007217001; GSVIVT00014310001; GSVIVT00027922001; LOC_Os12g29220; OJ1007_H05.17; OJ1115_D04.3; OSJNBa0044P19.5; OSJNBa0062A24.19; Os01g0541800; Os01g0700100; Os01g0881300; Os05g0426000; Os05g0

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	RAG1-activating protein-1-related	IPR004316	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3		IPR018169	-	-
Sma3		IPR018179	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G14770.1	SWEET2, AtSWEET2 Nodulin MtN3 family protein chr3:4957787-4959202 REVERSE LENGTH=236	57%
RefSeq	Arabidopsis thaliana	NP_566493.1	nodulin MtN3-like protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002300458.1	predicted protein, partial [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8D3

Fln msg:

Fln protein: MLSYEEIWHYAAGIAGNLFALGLFLSPIPTFSRITRNRSTEQFSVLPYIFALFNCLICTWYGLPFVSQNNILVTTVNAAGAIFQLFYISLYIAYCQKEERVKMVALLLLVVGIVIAIVLVTYEFMEQPLRKLFVGSLSVFSLISMFASPLSIIKLVIETRSVEFMPFYLSLSTFLMSVSFFAYGFLGQDPFVYVPNGIGSVLGMIQLGLYFSYRDIGRRRQAAQPLLSSTA*

Protein Length: 233

Fln nts: ACGTACCTGTCAAATGAATCTGGTGGCTTTCTGCGACCTCACTAAAAAGTTAATAATTATTTCTAATATCAGAAGGCATTTATAGGCGCGTTACTGCAATCAAGTCAATCTCCGTTCGTGGCAGAGTTAGATTAGTTCGTATTTTGACATTTTTTTAGCATTTGCAGTGCGCAAACTATCCGCA_-_ATGTTGTCTTACGAAGAGATTTGGCACTACGCTGCTGGAATCGCAGGCAACTTGTTTGCTCTGGGCCTTTTCTTGTCCCCGATTCCTACATTCAGCAGAATAACAAGAAATAGGTCAACCGAGCAATTTTCAGTCCTCCCTTATATCTTTGCACTCTTTAATTGCTTGATTTGCACATGGTATGGCCTTCCTTTTGTATCACAGAACAATATACTGGTGACCACTGTTAATGCAGCGGGAGCCATTTTTCAGCTATTCTACATCTCACTCTATATTGCATATTGCCAGAAGGAAGAACGGGTTAAAATGGTAGCATTGCTTCTGTTGGTTGTGGGTATAGTTATTGCAATAGTGTTGGTGACATACGAGTTTATGGAGCAGCCACTACGAAAGCTGTTCGTCGGTTCTCTTAGTGTATTCTCCCTCATCAGCATGTTTGCATCACCATTATCTATCATTAAGCTGGTAATTGAAACAAGAAGCGTGGAGTTTATGCCATTTTATCTCTCTCTTTCCACCTTTTTGATGAGTGTATCCTTTTTCGCATATGGATTCCTTGGCCAAGATCCTTTTGTTTATGTCCCAAATGGGATTGGCAGTGTTTTGGGCATGATACAGTTGGGGTTGTACTTCAGTTATCGCGACATTGGTCGGAGAAGGCAGGCTGCACAACCATTGCTGAGCTCAACTGCCTGA___GATTTTTCCCTACAAAATTGGCTGGCAGTGTTAGTTCACTCAGTGTTTGCTGCTTGAGTGTCAGATTCTTTACATAACAAATGATCATGCTTTCACCATCAGTCTGAATACATACATGTTTTGCGTATCGGAGCTTGATCACAGATTGGGATAAAATTTCCTCACTAGACTTTGAGCATGCTGTCCGGTAGCTGACCTTCGAGATTGGAATTGTAAAATGTTTCAATGACTCGGGATTGCTGGTTAAGCCGTAAATGTTTCCTTGCGGTTGGCAGAGTTCCTGCTAACTTGAGCAAGATAAAATCTCTATCGATTTTTCTAATTGTTTAGCAATTGAATCCAAAATAGATTTATGAAGACTCTTTAGACTTTGTAACATTTGCCATGATATACAAAATTAATTTACAGCCCAAAACGGAGGATCACATCAG

Fln Alignment:

Contig22837___MLSYEEIWHYAAGIAGNLFALGLFLSPIPTFSRITRNRSTEQFSVLPYIFALFNCLICTWYGLPFVSQNNILVTTVNAAGAIFQLFYISLYIAYCQKEERVKMXXXXXXXXXXXXXXXXXTYEFMEQPLRKLFVGSLSVFSLISMFASPLSIIKLVIETRSVEFMPFYLSLSTFLMSVSFFAYGFLGQDPFVYVPNGIGSVLGMIQLGLYFSYRDIGRRRQAAQPLLSSTA
D5A8D3_______________MMPDEEIWHYATGIADNFFALGLFLSPIPTFRRITKNKSTEQFSGLPYIFALLNCLICTWYGLPFVSRNNILVTTVNGTGAIFQLFYISLYIVYSQKEARVKMVVLLSLVMAIFISIVLVTYEFMKQPLRKVFVGSLSVISLVSMFASPLSIIKLVIETHSVEYMPFYLSLSTLLMSVSFFTYGFLGQDPFVYVPNGIGSVLGIIQLGLYFYYRNNRRRRQAVQPLLSSTA

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
553	30		70		1.0
600		12		87	0.992554
628	77		22		0.999999
680	12	87			0.992554
694	11			88	0.923564
696	11			88	0.923564
851	33		6	60	1.0
917		40		60	1.0
1163	20	80			0.995493
1167		80	20		0.995493
1262			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain