SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22778

Length: 1553 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene22778

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA recognition motif-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SU08_RICCO	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	26%

Source	Gene names
Sma3	At2g43410; GSVIVT00010298001; POPTRDRAFT_802569; POPTRDRAFT_920903; RCOM_0454390; VITISV_007871;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	3-beta-hydroxy-delta5-steroid dehydrogenase activity	GO:0003854	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	steroid biosynthetic process	GO:0006694	Biological Process	-
Sma3	embryo sac development	GO:0009553	Biological Process	-
Sma3	embryo development	GO:0009790	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	-
Sma3	chromatin silencing by small RNA	GO:0031048	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	-
Sma3	Reticulon	IPR003388	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Spen paralogue and orthologue SPOC, C-terminal	IPR012921	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G43410.2	-	2.99878e-43	50%
RefSeq	Arabidopsis thaliana	NP_181869.2	Flowering time control protein FPA [Arabidopsis thaliana]	2.99878e-43	50%
RefSeq	Populus trichocarpa	XP_002327991.1	predicted protein [Populus trichocarpa]	0.0	57%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKJ3

Fln msg: Separated hits, possible frame ERROR between 756 and 929, and possible frame ERROR between 1000 and 1020, Unexpected STOP codon at 3' end. Distance to subject end: 637 aas, your sequence is shorter than subject: 329 - 1019

Fln protein: MQLRGEPMANPRGVTLRPGLWQSNVLTPVGGAHFIRGPRGGPLPGNAFQVKGGEEEEVPPSQNLWVGNVTSEITEPMLMERFGKFGEINSISLYPLRNYAFVYFKHIEHAKAAKEGLQGAAMGDNFLKIEFARAAKPNKYLWVGGIIQTVTKEQIEAEFLKFGHVEDLKLFRDRNSAIVAYSKLEDAVSAVKYLNGRQLGSDPIRVDFLRSQSLKRENAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKQCSPSKILWIRYPDSVNIDEQRxxxxxxxLFGEIERIKSFPSRSLCIC*

Protein Length: 330

Fln nts: CCTCCTGCCACTCATATTTCATATTTGGTATATGTGATTCTTCGATACCTCCGTCGGTAGCCGATAGAGCGATCAGCGAGAAAGGGTTATGAG_-_ATGCAACTTCGAGGGGAACCGATGGCCAATCCAAGAGGCGTTACTCTGCGGCCCGGTCTGTGGCAGTCGAATGTGCTTACTCCAGTCGGCGGAGCTCATTTCATCCGCGGCCCTCGTGGGGGGCCGCTGCCGGGGAATGCCTTCCAGGTGAAGGGAGGCGAGGAGGAGGAAGTTCCACCGTCGCAGAATCTATGGGTAGGTAATGTGACCAGCGAGATCACAGAGCCTATGCTCATGGAAAGGTTTGGTAAGTTTGGAGAGATCAACAGTATATCGCTGTACCCGCTGCGGAACTACGCGTTTGTGTATTTCAAGCACATTGAGCATGCCAAAGCGGCCAAGGAGGGTCTGCAGGGCGCGGCCATGGGAGACAACTTTCTCAAAATCGAATTTGCCCGGGCGGCAAAACCTAATAAGTACCTTTGGGTAGGCGGCATAATTCAAACTGTCACAAAAGAACAGATAGAAGCTGAGTTTCTGAAATTTGGACATGTGGAAGACCTCAAATTATTTCGTGATCGGAACAGTGCCATTGTTGCCTATTCAAAACTAGAGGATGCTGTATCGGCTGTCAAATATTTAAATGGAAGACAGCTAGGCAGTGATCCTATTCGTGTGGATTTTCTGAGGTCTCAATCTCTGAAACGAGAGAATGCAGTGAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAAGCAATGCAGCCCAAGCAAGATCTTGTGGATAAGGTACCCTGATTCTGTAAACATTGATGAACAACGGxxxxxxxxxxxxxxxxxxxxxCTCTTTGGTGAGATAGAGCGGATCAAGAGTTTTCCATCAAGGTCATTATGCATTTGTTGAATTTAGAAGTGTCGATGAAGCTAGGCGTGCAAAAGATGGCAGTCAAGGAAGGCTTTTAAATGATCCTAGGATACAAATTCTTTATTCAAGTAGTGAGTTTGGGCCAATGGAAAATTCCAAAGATAATTCAACTTTTGTGACTCAATTTTGTGGATCACTTCCACATGAAACTCCCACTAGAAGTGGATCACAGTTTGGTTCGATTGAAAGGTTTGGGCCTGTGGGCATAATTGATTCCAGTAATCCTGCAGGAACAAATGTTGGGCCACGGGGCTTTGATGAGCACCATGCAACTGAAGGAAGAATTTCATTGTCAAGGCCAGATATGTTCAACAATTTTTTGGATGTCAATGTAAATGGTCCTGGGCCTGGTAGTTGGGGAAAACCACCCCCTCCTACAGATATAGGTCTAAGGCCTGTCAGGCCTCTATCAAGTTCTTGGGATGGATTCGATGCAAATGCTGCACAGAGGGAATT

Fln Alignment:

Contig22778___IRGPRGGPLPGNAFQVKGGEEEEVPPSQNLWVGNVTSEITEPMLMERFGKFGEINSISLYPLRNYAFVYFKHIEHAKAAKEGLQGAAMGDNFLKIEFARA-----------------------------------------------------AKPNKYLWVG-GIIQTVTKEQIEAEFLKFGHVEDLKLFRDRNSAIVAYSKLEDAVSAVKYLNGRQLGSDPIRVDFLRSQSLKRENAVNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKQCSPSKILWIRYPDSVNIDEQRLxxxxxxxFGEIERIKSFPSRS
B8LKJ3_______________VHGPRFDE-KSHLFGAQKTESDTIQASRNLWVGNVYQNVTETALAEQFSRFGEIESITVYSARNYAFINFRKEEDAVIAKRSLQGLVLSGLALRIEFAKGDSHLSSSHHADEHSRLRDDRRLAEVVGFSGLRDSRVPGPNSDASSDKHKEDKDAEPSEVLWIGFPSYMEIDEMGLRKEFSPFGEIEHITTFPGRTYAFVQFCSVVAACRAKEALQGKLFNNPRVNICFSKREVRSIEHGRNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKDAEPSEVLWIGFPSYMEIDEMGLxxxxxxxFGEIEHITTFPGRT

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
81	77		22		0.999999
345			25	75	0.996473
454	25	75			0.996473
661	83		16		0.994512
664	28		71		1.0
730			20	80	0.995493
808	75		25		0.996473
862	20	80			0.995493
864		80		20	0.995493
899	87			12	0.992554
900	87		12		0.992554
901		87	12		0.992554
902			12	87	0.992554
965	85			14	0.993533
1197		75		25	0.996473
1208	33			66	0.997452
1363	16		83		0.994512
1364		83		16	0.994512
1365	83		16		0.994512
1366		83		16	0.994512
1376	16		83		0.994512
1377	83	16			0.994512
1379			83	16	0.994512
1380			83	16	0.994512
1418	20			80	0.995493
1420			20	80	0.995493
1421			20	80	0.995493
1422			20	80	0.995493
1470	25	75			0.996473
1471		75		25	0.996473
1472		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain