SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22679

Length: 1626 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene22679 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NAD(P)-binding Rossmann-fold-containing protein [Arabidopsis thaliana] sp\|Q9FVR6.1\|Y1222_ARATH RecName: Full=Uncharacterized protein At1g32220, chloroplastic; Flags: Precursor gb\|AAG23446.1\|AC084165_12 unknown protein [Arabidopsis thaliana] gb\|AAM64920.1\|	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G32220.1	NAD(P)-binding Rossmann-fold superfamily protein chr1:11608038-11609591 FORWARD LENGTH=296	68%
RefSeq	Arabidopsis thaliana	NP_564390.1	NAD(P)-binding Rossmann-fold-containing protein [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002326745.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN07

Fln msg:

Fln protein: MAMTMAAASSCCYSNNSSSISHSLQTLRGPRLQLPRISILNANDPLSRRVASHAKLPACENKRRHIQCSYSTESSSGLDYSSVPIDVVADVKTEKIIVLGGSGFVGSAICKAAVAKGIEAVSLSRSGRPPYVDSWVDQVTWVAGDVFYAEWDGLLRGATAVVSTLGGFGTNEQMEKINGEANVLAVDAASKAGIPKFILISVHDYNLPSFLLNSGYFSGKRRAETEVLSKYPNSGTVLRPGFIYGKRKVNGFEIPLDLIGQPLEKFLLASENFTRVLSSLPGSDLFLAPPVSVDDVASAVINAVTDDSVFGIFTIEQIKEAAAVVRP*

Protein Length: 329

Fln nts: ATGGGCACCAAAACGGTATGTGATGCGTGGATGGCTTTGCTTGGGAAGTGGCTGGATAATGCAATGCAGGGCAGGGCATGTGTAGAAAATGATAATGGTGTTTGTATTATGTCAAATGAGTCGTGCAAACTACCGTAGCTGAGAGAAATCGTGTTGAAGGG_-_ATGGCGATGACGATGGCTGCTGCTTCTTCCTGTTGCTACTCCAACAACAGCAGCAGCATTTCCCATTCTCTACAGACTCTACGTGGTCCTCGCCTTCAATTGCCTCGCATTTCCATTTTGAATGCTAATGATCCTCTTTCTAGACGTGTAGCATCACATGCCAAATTGCCTGCTTGCGAGAATAAAAGGCGGCATATTCAGTGCAGTTATTCTACTGAGAGCAGCAGTGGGCTAGACTATTCATCTGTTCCAATAGATGTTGTGGCTGATGTCAAGACAGAAAAGATAATAGTTTTGGGAGGCAGTGGTTTTGTTGGATCGGCTATCTGTAAAGCAGCAGTTGCAAAGGGCATTGAAGCTGTCAGCCTGAGCAGGTCAGGGCGACCTCCATACGTAGATTCGTGGGTAGATCAAGTTACATGGGTAGCAGGTGATGTTTTCTATGCAGAGTGGGATGGATTACTTCGTGGTGCTACTGCTGTTGTTTCTACCCTTGGAGGCTTTGGTACAAATGAACAAATGGAGAAGATAAATGGAGAAGCTAATGTTTTGGCTGTGGATGCTGCCAGTAAGGCTGGAATCCCAAAGTTTATTTTAATCTCAGTACATGATTATAACCTTCCATCATTCTTACTGAATTCGGGATACTTCAGTGGAAAGAGACGAGCAGAGACGGAGGTCCTTTCGAAATATCCTAATTCAGGTACCGTGTTAAGACCTGGATTCATATATGGGAAGAGAAAAGTTAATGGATTTGAGATACCACTTGATTTGATTGGCCAGCCATTAGAGAAGTTTCTTCTTGCAAGTGAAAATTTTACAAGGGTTTTAAGCTCTCTACCAGGTTCAGACCTATTCTTAGCTCCTCCAGTTAGTGTTGATGACGTGGCTAGTGCAGTTATCAATGCAGTCACAGACGATTCTGTTTTTGGCATCTTCACAATTGAGCAAATTAAGGAAGCAGCTGCGGTAGTGAGGCCATAA___AGACTGTTGCCTGTCGGTATGAAGTTCTCCAAAGTCTGCGCATCTTATTTTGTAATCTATTTGGTTTGTTGCGAACCTTTTCTTCTTGGATTTCAGGACCTGGATCCATTCTTGTAAGTCTTTTAGTCATCTGTGGAGTGTTTATGCATATCTAACAGGATATTTCGTGATCTATACTTTACTCTCAAGTTCAGCAGGATTATGCAAATATTTTACTTGGCAACAAATATTGACTATCCTAGAAGTATACATTATGGAGCAAATCTAATGCAATGTGTACTATTATATTGAAAGACGACACAGAGACTCACTAATTATCACATGTTGGCTTCATTGAAAGATACTATTGCTTGAGGCCAAAGGAAACCTAAAAGGTTACTTTGTTGCTTGTGTAATCCCATTAACATTGACATCCGGGGCATTTTTTGTGGACACATGTAACATATCTAGCTATTCTGTAGATCACATTCTCATTGCTTTA

Fln Alignment:

Contig22679___LQTLRGPRLQLPRISILNANDPLSR-RVASHAKLPACENKRRHIQCSYSTESSSGLDYSSVPIDVVADVKTEKIIVLGGSGFVGSAICKAAVAKGIEAVSLSRSGRPPYVDSWVDQVTWVAGDVFYAEWDGLLRGATAVVSTLGGFGTNEQMEKINGEANVLAVDAASKAGIPKFILISVHDYNLPSFLLNSGYFSGKRRAETEVLSKYPNSGTVLRPGFIYGKRKVNGFEIPLDLIGQPLEKFLLASENFTRVLSSLPGSDLFLAPPVSVDDVASAVINAVTDDSVFGIFTIEQIKEAAAVVR
A9NN07_______________LQSLRGPR-----ISISSANSLLTLGRVASHAKLLARENKRQHIQCNYSTESSSGLDYSSAPIDVVADVKTEKIIVLGGSGFVGSAICKAAVARGIEAVSLSRLGRPTYIDSWVDQVTWVAGDVFYADWDGLLRGATAVVSTLGGFGTNEQMEKINGEANVLAVDAASKAGIPKFILISVHDYNLPSFLLNSGYFSGKRRAETEVLSKYPNSGTVLRPGFIYGKRKVNGFEIPLDLIGQPLEKFLLASENFTRGLSSLPGSDLFLAPPVSVDDVAGAVINAVTDDSVFGIFTIEQIKEAAAVVR

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
410	11		88		0.923564
542	83		16		0.999991
886	25			75	0.996473
888		75	25		0.996473
889		75		25	0.996473
914	20	80			0.995493
916	80			20	0.995493
1137	22	77			0.999999
1275		80		20	0.995493
1393	10		90		0.90298
1520	80	20			0.999996
1522		20		80	0.999996
1523	80	20			0.999996
1526	80			20	0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain