SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22662

Length: 2655 nt

UniGene Fasta

>sp_v3.0_unigene22662
TTTTTTTGCCGATTCGGAGTTTGCTTGCTCTATTTGCTCTTCCGCTTCCTCCTATCTTTCTTCATTTTTAACTCCTGAAAGGTGGTTGGCTCACAATTCTCATACAAATACATACAGACAGATAGATCTGTCTACACCTAAAATGGTCATGGTGATGGTCAAGATTTGAGAAGATCTGTGTGTAAGATAACGATGCGGGAATGGATTCTTCTGCGATGAATAAATCCCTGGGAAAAGGCGAGGGATCGATTTGATTTGGGGCAAATTTTGTTATTTAGGGACGGTGAAGCGAGGTTATTAACTGTATGGGATGGAGCCTCGCGTGGGTAACAAATACAGACTCGGCCGCAAGATTGGCAGCGGCTCCTTTGGCGAGATCTATTTAGGTACTAATATTCAGTCCAATGAGGAGGTGGCGATCAAGCTGGAAAATGTGAAGACAAAGCATCCACAACTTGTATATGAGGCCAAGTTGTACAGGCTCCTTCAAGGAGGAACTGGTATTGCAAATGTAAGATGGTTTGGTGTGGAAGGTGACTATAATGTCCTTGTCATGGACTTGTTGGGACCGAGCCTTGAGGATCTCTTTAATTTCTGTAGTCGGAAGCTTTCTCTCAAGACTGTTCTCATGCTTGCAGATCAAATGATAAACAGGATTGAATTTGTGCATTCAAGATGCTTCCTTCATAGAGACGTCAAACCTGATAATTTTCTCATGGGTCTTGGTAGAAGAGCAAACCAGGTCTATGTAATTGATTTCGGACTTGCTAAAAAGTACAGAGATCCTATCAGTCACCAACACATTCCTTACAGAGAGAACAAAAATTTGACTGGAACTGCCCGATATGCAAGCATGAACACTCATCTTGGCATTGAGCAAAGTCGTAGAGATGATTTAGAATCTCTTGGATATGTTCTCATGTATTTTTTGAGGGGCAGTCTTCCATGGCAGGGTCTGAAAGCTGGTACAAAAAAACAAAAGTATGAAAAGATCAGTGAGAAAAAGGTTGCCACCCCCATTGAGGTCCTGTGTAAGACATATCCCTCGGAGTTTGCGTCGTATTTTCATTATTGCCGATCATTACGCTTTGATGACAGACCTGATTATGCATACCTGAAGAGAATATTCCGTGATCTTTTCATTCGTGAAGGTTTTCAGTTTGATTATGTGTTTGATTGGACCATTTTGAAGTATCAGCAGACACAGATGGCCAATACACCTCCACCACCTATTGGTGCTGCTGGTGTAGGGACTAGCTCTAGGGCAGCTGCAGTTGCTGATAAGCCATCAGGTGGTCAAGATGGAAGGGACAATCCGTGGGGCAATGCTGGGGCTGATGGTTCTCGAAGAAGAAACTCTAGTGCTATTGTGAATGCTGGTAGTCTATCAAAGCATAAAAGCCCAGTCCAAAATGATGCTGGAGCTGGAAAAGATGTGGTAATTGGCCGTCCAGAGAGGCCAGATCGTGTCCATTTATCTGGTCTGATTGGCCAAACTGGCAGCACATCAAGACGAGGAGTGATTTCGAGTAGCAGGCAAGCAATTCTGTCTGATGCTGATTCATCATCACGTCCACGTGCAGCTGACTTAAGTCCTATTCCATTGCACAACCCTGGAGGCCAGCGGAGCTCTCCAGTAAGTTCTGCAGATCCCAAGCGATCTGGTTCTGGTCGGATTATGCCAAGTTCTAGGAATTATGAAGCTACCTTGAAAGGCATTGAGGGTCTTTCCTTTGATATGGACAAAAGGCAGTAAATAAAGGGTTTCGAAGACCAGATTTTCTGGCCCTAAAGAATCTCAACATGATGCCTGACAAAGTTTCAAGGACCTCCTTTGTCATGCAAACTAATTTGTCAATATCGGCCAGTTCGAGGGATGTGATATAAATGATTAGAATTCCTTGTGCCGCGTGGTTAATTTTCATAGATGTCCATAACTGCACAATGGACTAATTTTCATAGTTCACAACTTTGGAAGTTTGGGCTATTGTGCAGTAGCACTGATGACATTATTGGATCTTGTAAATTGGATATGTACATTATATTAAAGTACGCAATTTGTTTGGCAAAACCGGGATATGTGCTTTTAAGTAGACATAAAGGTTGAACCAGGTAAATATCTCGAATGGTTTTATTTATATTTGCAACCTACGGTACATCTACAATATGAGAAGACTTGGCGTGGCAAAAAGTTGGTTTCATAAGAAAATCAAGCTGTGTTGTTTCAAGTGAGACACATGACAACTCCCCTTTCTGGTCTGGTGCTGGGTGTGAAATCCTTTATCAATCAACTTTCGAGGTACTTTCTGTGATAAAATAATGACCCGCAATCTGCTTATTGGCAAATGAGCTTATTAGTAATCCTAATTTCTTCAAAATGTGCTGTGTGGTTATTTTATAGAGGCAATGGAATTGCTAAGTTTTCATTAAGACTTCTTAAAGGCAATGGAATTGCTAATTGAAGGAATTGTTTAGCTTTGGATAGATCAGGAACAGCTATAACATTTGGATATTAATCCTGTATAGTTTTACTGAATGAAATTGTCAGTGCCATTTTTCTCTTAGTGTATAATTTCTCGCATCTTCTGTACTATTAAATATTTGCCCTTTTTATTGGATGCTTTTTTTAGACACGAAATTTGACTTATGTTATAC

Ace file of the UniGene sp_v3.0_unigene22662

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	casein kinase I-like [Oryza sativa Japonica Group]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G72710.1	CKL2 casein kinase 1-like protein 2 chr1:27372553-27376178 FORWARD LENGTH=465	70%
RefSeq	Arabidopsis thaliana	NP_177415.1	casein kinase 1-like protein 2 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002330485.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUC1

Fln msg:

Fln protein: MEPRVGNKYRLGRKIGSGSFGEIYLGTNIQSNEEVAIKLENVKTKHPQLVYEAKLYRLLQGGTGIANVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRIEFVHSRCFLHRDVKPDNFLMGLGRRANQVYVIDFGLAKKYRDPISHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATPIEVLCKTYPSEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQTQMANTPPPPIGAAGVGTSSRAAAVADKPSGGQDGRDNPWGNAGADGSRRRNSSAIVNAGSLSKHKSPVQNDAGAGKDVVIGRPERPDRVHLSGLIGQTGSTSRRGVISSSRQAILSDADSSSRPRAADLSPIPLHNPGGQRSSPVSSADPKRSGSGRIMPSSRNYEATLKGIEGLSFDMDKRQ*

Protein Length: 483

Fln nts: TTTTTTTGCCGATTCGGAGTTTGCTTGCTCTATTTGCTCTTCCGCTTCCTCCTATCTTTCTTCATTTTTAACTCCTGAAAGGTGGTTGGCTCACAATTCTCATACAAATACATACAGACAGATAGATCTGTCTACACCTAAAATGGTCATGGTGATGGTCAAGATTTGAGAAGATCTGTGTGTAAGATAACGATGCGGGAATGGATTCTTCTGCGATGAATAAATCCCTGGGAAAAGGCGAGGGATCGATTTGATTTGGGGCAAATTTTGTTATTTAGGGACGGTGAAGCGAGGTTATTAACTGTATGGG_-_ATGGAGCCTCGCGTGGGTAACAAATACAGACTCGGCCGCAAGATTGGCAGCGGCTCCTTTGGCGAGATCTATTTAGGTACTAATATTCAGTCCAATGAGGAGGTGGCGATCAAGCTGGAAAATGTGAAGACAAAGCATCCACAACTTGTATATGAGGCCAAGTTGTACAGGCTCCTTCAAGGAGGAACTGGTATTGCAAATGTAAGATGGTTTGGTGTGGAAGGTGACTATAATGTCCTTGTCATGGACTTGTTGGGACCGAGCCTTGAGGATCTCTTTAATTTCTGTAGTCGGAAGCTTTCTCTCAAGACTGTTCTCATGCTTGCAGATCAAATGATAAACAGGATTGAATTTGTGCATTCAAGATGCTTCCTTCATAGAGACGTCAAACCTGATAATTTTCTCATGGGTCTTGGTAGAAGAGCAAACCAGGTCTATGTAATTGATTTCGGACTTGCTAAAAAGTACAGAGATCCTATCAGTCACCAACACATTCCTTACAGAGAGAACAAAAATTTGACTGGAACTGCCCGATATGCAAGCATGAACACTCATCTTGGCATTGAGCAAAGTCGTAGAGATGATTTAGAATCTCTTGGATATGTTCTCATGTATTTTTTGAGGGGCAGTCTTCCATGGCAGGGTCTGAAAGCTGGTACAAAAAAACAAAAGTATGAAAAGATCAGTGAGAAAAAGGTTGCCACCCCCATTGAGGTCCTGTGTAAGACATATCCCTCGGAGTTTGCGTCGTATTTTCATTATTGCCGATCATTACGCTTTGATGACAGACCTGATTATGCATACCTGAAGAGAATATTCCGTGATCTTTTCATTCGTGAAGGTTTTCAGTTTGATTATGTGTTTGATTGGACCATTTTGAAGTATCAGCAGACACAGATGGCCAATACACCTCCACCACCTATTGGTGCTGCTGGTGTAGGGACTAGCTCTAGGGCAGCTGCAGTTGCTGATAAGCCATCAGGTGGTCAAGATGGAAGGGACAATCCGTGGGGCAATGCTGGGGCTGATGGTTCTCGAAGAAGAAACTCTAGTGCTATTGTGAATGCTGGTAGTCTATCAAAGCATAAAAGCCCAGTCCAAAATGATGCTGGAGCTGGAAAAGATGTGGTAATTGGCCGTCCAGAGAGGCCAGATCGTGTCCATTTATCTGGTCTGATTGGCCAAACTGGCAGCACATCAAGACGAGGAGTGATTTCGAGTAGCAGGCAAGCAATTCTGTCTGATGCTGATTCATCATCACGTCCACGTGCAGCTGACTTAAGTCCTATTCCATTGCACAACCCTGGAGGCCAGCGGAGCTCTCCAGTAAGTTCTGCAGATCCCAAGCGATCTGGTTCTGGTCGGATTATGCCAAGTTCTAGGAATTATGAAGCTACCTTGAAAGGCATTGAGGGTCTTTCCTTTGATATGGACAAAAGGCAGTAA___ATAAAGGGTTTCGAAGACCAGATTTTCTGGCCCTAAAGAATCTCAACATGATGCCTGACAAAGTTTCAAGGACCTCCTTTGTCATGCAAACTAATTTGTCAATATCGGCCAGTTCGAGGGATGTGATATAAATGATTAGAATTCCTTGTGCCGCGTGGTTAATTTTCATAGATGTCCATAACTGCACAATGGACTAATTTTCATAGTTCACAACTTTGGAAGTTTGGGCTATTGTGCAGTAGCACTGATGACATTATTGGATCTTGTAAATTGGATATGTACATTATATTAAAGTACGCAATTTGTTTGGCAAAACCGGGATATGTGCTTTTAAGTAGACATAAAGGTTGAACCAGGTAAATATCTCGAATGGTTTTATTTATATTTGCAACCTACGGTACATCTACAATATGAGAAGACTTGGCGTGGCAAAAAGTTGGTTTCATAAGAAAATCAAGCTGTGTTGTTTCAAGTGAGACACATGACAACTCCCCTTTCTGGTCTGGTGCTGGGTGTGAAATCCTTTATCAATCAACTTTCGAGGTACTTTCTGTGATAAAATAATGACCCGCAATCTGCTTATTGGCAAATGAGCTTATTAGTAATCCTAATTTCTTCAAAATGTGCTGTGTGGTTATTTTATAGAGGCAATGGAATTGCTAAGTTTTCATTAAGACTTCTTAAAGGCAATGGAATTGCTAATTGAAGGAATTGTTTAGCTTTGGATAGATCAGGAACAGCTATAACATTTGGATATTAATCCTGTATAGTTTTACTGAATGAAATTGTCAGTGCCATTTTTCTCTTAGTGTATAATTTCTCGCATCTTCTGTACTATTAAATATTTGCCCTTTTTATTGGATGCTTTTTTTAGACACGAAATTTGACTTATGTTATAC

Fln Alignment:

Contig22662___MEPRVGNKYRLGRKIGSGSFGEIYLGTNIQSNEEVAIKLENVKTKHPQLVYEAKLYRLLQGGTGIANVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRIEFVHSRCFLHRDVKPDNFLMGLGRRANQVYVIDFGLAKKYRDPISHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTXXXXXXXXXXXXVATPIEVLCKTYPSEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQTQMANTPPPPIGAAGVGTSSRAAAVADKPSGGQDGRDNPWGNAGADGSRRRNSSAIVNAGSLSKHKSPVQNDAGAGKDVV-IGRPERPDRVHLSGLIGQTGSTSRRGVISSSRQAIXXXXXXXXXXXXXXXXXIPLHNPGGQRSSPVSSADPKRSGSGRIMPSSRNYEATLKGIEGLSFDMDKRQ
A9NUC1_______________MEPRVGNKYRLGRKIGSGSFGEIYLGTNIQSNEEVAIKLENVKTKHPQLVYEAKLYRLLQGGTGIANVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRIEFVHSRCFLHRDVKPDNFLMGLGRRANQVYVIDFGLAKKYRDPVSHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATPIEVLCKTYPSEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVLDWTILKYQQTQMANTPPPSIGAA-VGSSSRAPPVADKSSGGQDGRDNPWSSAGADSSRRRNTGAIVNAGSLSKHKSPAQNESGAGKDVVNVGRPERPDRVHLSGLISQTGSTSRRGVISSSRQAILSDADSSSRPRAADLSPIALHNTGGQRSSPVSSADPKRSGSGRIMPSSRNYEATLKGIEGLSFDMDKRQ

SNPs (tot: 4)

Position	C %	T %	Probability
617	80	20	0.995493
695	80	20	0.995493
716	75	25	0.996473
2564	33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain