SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22580

Length: 3531 nt

UniGene Fasta

>sp_v3.0_unigene22580
GTTGCACATACAGATCATATACAGAACACTAATTAGACAGCCAATCAATCAACCCATTGGCCCCTATCAACCTATTGGCCTCTAGGCGTTCCAGCTACCGCAACAGTTATTGTGTCTCCTAGAGGCTACTGGGTACTGCTGCTGACGATGGCAATGATGCCATTGCCAGTACTGTTGAGTTGTTGATATTGCTATTTTGATGGTCCATCCTTCTCATCCTTCGTTTCTTTAAATCCTCTCAATTTAAGTTTCCTAGAATCCTCAGGTTTTTAATGGTGGTATTTGTACTGGTTACAGTTGTTTTCTGTACAGTGTAACATGGATATCTGATGTTCGCCACAGTGATTCTTATGGATCATACATATATATATTTCAACCAGGTCTGATATATATTTGTGGGAATCATATCTAATACTGAAAGCATTTGCTTTCTGCTGCTGCTGTGATCTATTCCTATGTTCTGTATACGAATAGGATAGATTACCTTTACTCATATGAAGCCTCTGCTGCTGCTAGTTAGTGTGTTTATGTTTCAGTATATATCTTATTCTGGTCATGCCGAGTGTTTTATGCTGTGGATATGGTCTGGGAATTAAGAGTAACCGAGGCTCAAGAGGCCGAAGCTCTTAGAATCTTGATATTTTAATGTTTATCTTTTTAACGTCCTTTGAGACTTGACTTGGCCTTGGCTGGATTGGCGGATCATGTGTGAAGAAGATTTTGTTATTATAAATCAAGTTTTTTTATACATGATCATGCCAACAGCAAATTGTAATGAGTCATGGTCCTAACGGTGGCTATTCTTACAGTTTGTAGGAGCCAGCCATCCTTCTTGTAGACTTTGAGGCAGCAGTCTTGTTGTTCCTGCTATTAAGGGATATGGCTATGAGCTAATTAAAATTGAGGGCAACAATGGAAACGAATCTCTTAACGCAGCACAATCAGGTTGACATGATGCTGAAGAGGACTATGATGGTGGTTATTGAGTGTTGATTAAATAACAGACCCCCCAACAATAGAAACAGAACATCAGTTGGATGCTGGTTATAATTGAGACAGTTGGGTTATGACTGTAAAACTGAAGACATTGGATGGCAATGGATTTGAGTCAGAATGGCTGCATGACAGTGGTTATACTTTGATTTAGCTGGGGTTGTGGTGATGGATATATGGCAGCCGTGGTTATGGATTTTCATGGGAGTGGCTGTTTGATCAATATATGGCAGTTTCTACTTATGTGGATGAATATTTCACAAAGGGGAATGCCTATATGGAAGTAGTTTTATAACCATGGTTATGGACTTAAGTTTGATCAATTGTATGAAAGTGTGTACATGGCTCTAGTTAAGGGCACGAAGATAGGAAGCTCTGGATATGGACTTCAGCTTGGTGGCTGTATGACACTGGGTGCCTTTATATGCTTAAGGATTTGAGTTGGGTTCATTGATTTCATTTTGTTGCAGATAATTTGAGAAGCAATCCGGGGATGAATCTAAACGATCATACTTACAATTTATCACCTATGGCTAATTCAGGAAATCCGGAAGAGCAGATTGATGAGGATGCAGTGGATGACTTTATGAACTACCAACCCGAGTCTAAAAAGAGAAGACTTACAGTAGAACAGGTGAGGTCTTTAGAGAGGAGTTTCGAAATCGAGACCAAGCTGGAACCAGAGAAAAAGATACAGTTGGCTCAAGAGCTTGGACTTCAACCCCGTCAAGTAGCTATTTGGTTCCAGAACAGAAGGGCGAGATGGAAGACCAAGCAGCTTGAGAGAGATTACAGCGTTCTCAAAGCTAGTTATGATGCTTTAAAATCTGATTTTGAGAGATTGCAGCAGGAAAACAAAAATATCCGTGCCGAGCTGGAGAGTTTAAAAGAGAAGCTGGAAGAAGCAGATTGCTGCAAAGAGGACAACCACAGTGACATGGCAACATCAACGAAGGTAACAAGCACCATTGAAAATAGCAAGAAACTTGCAGCAGATGTTGCAGGCGAGGAAAATGATATTGACATCAAGCCTTTCAGTGATATTACACTGCTCTTCAAGGAGAAAGATATGGGTTTGGAGAAGATGGATATTAAGCCGTTCAGAGTAATGTTATTGAATGAGAAAGAGGGATCTTTTAGCCCTGGCAGTGACTGTAGTGCCAATACAAGGAATGAAGACAAGAATCCCCCACATCAAATCCTTAGTCATCTTGCACAGGCTTCTTCATCTATGAAATACCCGTCTGGTACTAATAATATAGCTGGTATGGATAACATCAATGACCAAGGTCTTATGCATCTGGCTGAGGCACTTTGTGGCATGGGCCTTCCTCCAAAAGCATATCAGCAACTTTTCAGAGTAGATGAAGGATATCTTCATGAAGATGCTTGCAACCACTTTTCCAATGAAGATGACCAAGGTGCTCCAAGTACTCTGCCATGGTGGGAGTACTGGCCTTGAGCCTTGCTCAGTAGTAGTAAATTATCTTGCCCTCGCAATAGATATATGGCAGAAAGGAAAAATTAACCTTATGGCCAAATTAATATTCTGTTGGTGAGATGGATGATTGTAAATTCTTATGGCTTGCAACCAAGTCTGCTTAAAGATTGTAAAAGAAGCAGATTCCTGCAATATTAAGTTACTGTAAATTTCAGTATGCATTAAATGTATATTGCTGGCTATGTCCTCAGGGGATTGCAGTGGTGGTGGGGGAAGAGGAGAAATAGTAAAAGAGAAACGCTGCTAAGTCACAAATTTAGGCTGAACATAAATTGGTCCTTTTGGGACCTCTGCGAGACAGCTTCTATCTTGGCACATCTTCAAACTAAACAGTTTTGGAGGATAATCTGCAGTCTGGATTGGATTATAGATTGACTACTAAATTCGGAGTATTGCATGTACAGAGAAGGAGAAAGTCATGGGAAAAAGGGCCTTCCTTTACGCATGCCATGTACTCTCCATGATAAGTTTATGCAAGCTTTATTATAAATCTATATTGTTCAATTTAAAGGAGGGTGAAATGATGAAAATCTCATAAACATGCAGGCTAAGCTAAATCAACATAGACAGTGGTTATATACAAGCCTACTGGCAGAAAGCTATACACAAAGTATGGTAATAACCTATTTCATAATCAATATACCCTTCAACTACAATATTTGTTGCACAAAGAATTGATACTGCGAAGGAGAAATGAACGGACCATCTTAGCATATTTAGATTGTTGCTTTATCTGCCTACAAATAGGGTTGAAAAGTTTTGAATGCTCTGATTACCTTAAAGTGTTTGGGACATTGTTTTTAAGATATTCACATACAAGAGTTTAAGATTTGTTCCAAATTCTCGGTTAGTTGTAAAATACAGAAAATACTCAATATCCAGGCAAGGTTCTAAGGGGATATGATTGACACATGTGGCAATTCTGGAAAGCGCGTCTCTGGATCCCAAGGAATATCCATCAGATTTGATACTGTGTCTAGTCATGTATATAATGTTTTTGGTCCTATGTCTCAAGGCTATCAAAGGTCTCCGAACAT

Ace file of the UniGene sp_v3.0_unigene22580

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	homeodomain-leucine zipper protein 57 [Glycine max]	-	-	5.0e-34	54%
FL-Next	Isoform 2 of Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana GN=HAT7	-	-	0.0	53%
Sma3	Homeobox protein, putative	-	-	3.486e-21	-

Source	Gene names
Sma3	ATHB-1; ATHB-12; ATHB-13; ATHB-16; ATHB-3; ATHB-5; ATHB-53; ATHB-54; ATHB-7; At1g27050; At1g69780; At2g46680; At3g01470; At3g61890; At4g40060; At5g15150; At5g65310; At5g66700; CPHB-4; CPHB-5; CPHB-6; CPHB-7; Crhb11; Crhb6; Crhb8; F21F14.60; F4P13.2; F8M21

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to blue light	GO:0009637	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	negative regulation of cell growth	GO:0030308	Biological Process	-
Sma3		GO:0045941	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	-
Sma3	photoperiodism, flowering	GO:0048573	Biological Process	-
Sma3	cotyledon morphogenesis	GO:0048826	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3		IPR012287	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G01470.1	ATHB-1, ATHB1, HD-ZIP-1, HAT5, HB-1 homeobox 1 chr3:182648-184034 REVERSE LENGTH=272	2.0e-34	60%
RefSeq	Arabidopsis thaliana	NP_186796.1	homeobox-leucine zipper protein HAT5 [Arabidopsis thaliana]	2.0e-34	60%
RefSeq	Populus trichocarpa	XP_002321530.1	predicted protein [Populus trichocarpa]	4.0e-38	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q00466-2

Fln msg: your sequence is longer than subject: 323 - 151

Fln protein: MNLNDHTYNLSPMANSGNPEEQIDEDAVDDFMNYQPESKKRRLTVEQVRSLERSFEIETKLEPEKKIQLAQELGLQPRQVAIWFQNRRARWKTKQLERDYSVLKASYDALKSDFERLQQENKNIRAELESLKEKLEEADCCKEDNHSDMATSTKVTSTIENSKKLAADVAGEENDIDIKPFSDITLLFKEKDMGLEKMDIKPFRVMLLNEKEGSFSPGSDCSANTRNEDKNPPHQILSHLAQASSSMKYPSGTNNIAGMDNINDQGLMHLAEALCGMGLPPKAYQQLFRVDEGYLHEDACNHFSNEDDQGAPSTLPWWEYWP*

Protein Length: 324

Fln nts: GTTGCACATACAGATCATATACAGAACACTAATTAGACAGCCAATCAATCAACCCATTGGCCCCTATCAACCTATTGGCCTCTAGGCGTTCCAGCTACCGCAACAGTTATTGTGTCTCCTAGAGGCTACTGGGTACTGCTGCTGACGATGGCAATGATGCCATTGCCAGTACTGTTGAGTTGTTGATATTGCTATTTTGATGGTCCATCCTTCTCATCCTTCGTTTCTTTAAATCCTCTCAATTTAAGTTTCCTAGAATCCTCAGGTTTTTAATGGTGGTATTTGTACTGGTTACAGTTGTTTTCTGTACAGTGTAACATGGATATCTGATGTTCGCCACAGTGATTCTTATGGATCATACATATATATATTTCAACCAGGTCTGATATATATTTGTGGGAATCATATCTAATACTGAAAGCATTTGCTTTCTGCTGCTGCTGTGATCTATTCCTATGTTCTGTATACGAATAGGATAGATTACCTTTACTCATATGAAGCCTCTGCTGCTGCTAGTTAGTGTGTTTATGTTTCAGTATATATCTTATTCTGGTCATGCCGAGTGTTTTATGCTGTGGATATGGTCTGGGAATTAAGAGTAACCGAGGCTCAAGAGGCCGAAGCTCTTAGAATCTTGATATTTTAATGTTTATCTTTTTAACGTCCTTTGAGACTTGACTTGGCCTTGGCTGGATTGGCGGATCATGTGTGAAGAAGATTTTGTTATTATAAATCAAGTTTTTTTATACATGATCATGCCAACAGCAAATTGTAATGAGTCATGGTCCTAACGGTGGCTATTCTTACAGTTTGTAGGAGCCAGCCATCCTTCTTGTAGACTTTGAGGCAGCAGTCTTGTTGTTCCTGCTATTAAGGGATATGGCTATGAGCTAATTAAAATTGAGGGCAACAATGGAAACGAATCTCTTAACGCAGCACAATCAGGTTGACATGATGCTGAAGAGGACTATGATGGTGGTTATTGAGTGTTGATTAAATAACAGACCCCCCAACAATAGAAACAGAACATCAGTTGGATGCTGGTTATAATTGAGACAGTTGGGTTATGACTGTAAAACTGAAGACATTGGATGGCAATGGATTTGAGTCAGAATGGCTGCATGACAGTGGTTATACTTTGATTTAGCTGGGGTTGTGGTGATGGATATATGGCAGCCGTGGTTATGGATTTTCATGGGAGTGGCTGTTTGATCAATATATGGCAGTTTCTACTTATGTGGATGAATATTTCACAAAGGGGAATGCCTATATGGAAGTAGTTTTATAACCATGGTTATGGACTTAAGTTTGATCAATTGTATGAAAGTGTGTACATGGCTCTAGTTAAGGGCACGAAGATAGGAAGCTCTGGATATGGACTTCAGCTTGGTGGCTGTATGACACTGGGTGCCTTTATATGCTTAAGGATTTGAGTTGGGTTCATTGATTTCATTTTGTTGCAGATAATTTGAGAAGCAATCCGGGG_-_ATGAATCTAAACGATCATACTTACAATTTATCACCTATGGCTAATTCAGGAAATCCGGAAGAGCAGATTGATGAGGATGCAGTGGATGACTTTATGAACTACCAACCCGAGTCTAAAAAGAGAAGACTTACAGTAGAACAGGTGAGGTCTTTAGAGAGGAGTTTCGAAATCGAGACCAAGCTGGAACCAGAGAAAAAGATACAGTTGGCTCAAGAGCTTGGACTTCAACCCCGTCAAGTAGCTATTTGGTTCCAGAACAGAAGGGCGAGATGGAAGACCAAGCAGCTTGAGAGAGATTACAGCGTTCTCAAAGCTAGTTATGATGCTTTAAAATCTGATTTTGAGAGATTGCAGCAGGAAAACAAAAATATCCGTGCCGAGCTGGAGAGTTTAAAAGAGAAGCTGGAAGAAGCAGATTGCTGCAAAGAGGACAACCACAGTGACATGGCAACATCAACGAAGGTAACAAGCACCATTGAAAATAGCAAGAAACTTGCAGCAGATGTTGCAGGCGAGGAAAATGATATTGACATCAAGCCTTTCAGTGATATTACACTGCTCTTCAAGGAGAAAGATATGGGTTTGGAGAAGATGGATATTAAGCCGTTCAGAGTAATGTTATTGAATGAGAAAGAGGGATCTTTTAGCCCTGGCAGTGACTGTAGTGCCAATACAAGGAATGAAGACAAGAATCCCCCACATCAAATCCTTAGTCATCTTGCACAGGCTTCTTCATCTATGAAATACCCGTCTGGTACTAATAATATAGCTGGTATGGATAACATCAATGACCAAGGTCTTATGCATCTGGCTGAGGCACTTTGTGGCATGGGCCTTCCTCCAAAAGCATATCAGCAACTTTTCAGAGTAGATGAAGGATATCTTCATGAAGATGCTTGCAACCACTTTTCCAATGAAGATGACCAAGGTGCTCCAAGTACTCTGCCATGGTGGGAGTACTGGCCTTGA___GCCTTGCTCAGTAGTAGTAAATTATCTTGCCCTCGCAATAGATATATGGCAGAAAGGAAAAATTAACCTTATGGCCAAATTAATATTCTGTTGGTGAGATGGATGATTGTAAATTCTTATGGCTTGCAACCAAGTCTGCTTAAAGATTGTAAAAGAAGCAGATTCCTGCAATATTAAGTTACTGTAAATTTCAGTATGCATTAAATGTATATTGCTGGCTATGTCCTCAGGGGATTGCAGTGGTGGTGGGGGAAGAGGAGAAATAGTAAAAGAGAAACGCTGCTAAGTCACAAATTTAGGCTGAACATAAATTGGTCCTTTTGGGACCTCTGCGAGACAGCTTCTATCTTGGCACATCTTCAAACTAAACAGTTTTGGAGGATAATCTGCAGTCTGGATTGGATTATAGATTGACTACTAAATTCGGAGTATTGCATGTACAGAGAAGGAGAAAGTCATGGGAAAAAGGGCCTTCCTTTACGCATGCCATGTACTCTCCATGATAAGTTTATGCAAGCTTTATTATAAATCTATATTGTTCAATTTAAAGGAGGGTGAAATGATGAAAATCTCATAAACATGCAGGCTAAGCTAAATCAACATAGACAGTGGTTATATACAAGCCTACTGGCAGAAAGCTATACACAAAGTATGGTAATAACCTATTTCATAATCAATATACCCTTCAACTACAATATTTGTTGCACAAAGAATTGATACTGCGAAGGAGAAATGAACGGACCATCTTAGCATATTTAGATTGTTGCTTTATCTGCCTACAAATAGGGTTGAAAAGTTTTGAATGCTCTGATTACCTTAAAGTGTTTGGGACATTGTTTTTAAGATATTCACATACAAGAGTTTAAGATTTGTTCCAAATTCTCGGTTAGTTGTAAAATACAGAAAATACTCAATATCCAGGCAAGGTTCTAAGGGGATATGATTGACACATGTGGCAATTCTGGAAAGCGCGTCTCTGGATCCCAAGGAATATCCATCAGATTTGATACTGTGTCTAGTCATGTATATAATGTTTTTGGTCCTATGTCTCAAGGCTATCAAAGGTCTCCGAACAT

Fln Alignment:

Contig22580___GMNLNDHTYNLSPMA-NSGNPEEQIDED--AVDDFMNYQPESKKRRLTVEQVRSLERSFEIETKLEPEKKIQLAQELGLQPRQVAIWFQNRRARWKTKQLERDYSVLKASYDALKSDFERLQQENKNIRA
Q00466-2_____________GVSDHHHLTQKSPTTTNNMNDQDQVGEEDNLSDDGSHMMLGEKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHA

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
946		80		20	0.995493
2985			20	80	0.995493
3005			25	75	0.996473
3007	66			33	0.997452
3154	90		10		0.90298
3165	88	11			0.923564
3212		11		88	0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
432	443	CTG CTG CTG CTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain