SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22563

Length: 723 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene22563

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ALO domain containing protein	-	-	1.0e-11	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Gulonolactone oxidase, putative	-	-	3.005e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	L-gulonolactone oxidase.	EC:1.1.3.8	-	4.294e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		4.294e-08	%
Sma3	Metabolic pathways	01100		4.294e-08	%

Source	Gene names
Sma3	At2g46740; At2g46760; At5g56470; F15N18_130; GSVIVT00026155001; LOC_Os03g36530; OSIGBa0111E13.1; OSIGBa0113I06.5; OSJNBa0034E24.20; OSJNBa0034E24.8; Os02g0124400; Os02g0124600; Os03g0563100; Os04g0360500; Os04g0361500; Os08g0114300; OsI_05664; OsI_05665;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	D-arabinono-1,4-lactone oxidase activity	GO:0003885	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	D-arabinono-1,4-lactone oxidase	IPR007173	-	-
Sma3	Plant-specific FAD-dependent oxidoreductase	IPR010030	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G46760.1	D-arabinono-1,4-lactone oxidase family protein chr2:19213028-19215166 REVERSE LENGTH=603	2.8026e-45	45%
RefSeq	Arabidopsis thaliana	NP_182199.1	D-arabinono-1,4-lactone oxidase family protein [Arabidopsis thaliana]	4.2039e-45	45%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
247		50		50	1.0
265		50	50		1.0
288	50		50		1.0
289	50		50		1.0
326	50		50		1.0
400	10	90			0.90298
457		50	50		1.0
496		44	55		1.0
520			62	37	1.0
522	87		12		0.992554
530		14		85	0.993533
571	57		42		1.0
580		42		57	1.0
588	57	42			1.0
590			42	57	1.0
600	71		28		1.0
606	28		71		1.0
617	50		50		1.0
674			75	25	0.996473
687			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain