SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22550

Length: 954 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene22550

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alcohol dehydrogenase, putative [Arabidopsis thaliana]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Alcohol dehydrogenase	-	-	8.418e-25	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxidoreductases, Acting on the CH-OH group of donors, With NAD(+) or NADP(+) as acceptor.	EC:1.1.1.-	-	2.868e-10	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fructose and mannose metabolism	00051		2.868e-10	%
Sma3	Ascorbate and aldarate metabolism	00053		2.868e-10	%
Sma3	Steroid hormone biosynthesis	00140		2.868e-10	%
Sma3	Tetracycline biosynthesis	00253		2.868e-10	%
Sma3	Glycine, serine and threonine metabolism	00260		2.868e-10	%
Sma3	Benzoate degradation	00362		2.868e-10	%
Sma3	Bisphenol degradation	00363		2.868e-10	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520		2.868e-10	%
Sma3	Polyketide sugar unit biosynthesis	00523		2.868e-10	%
Sma3	Linoleic acid metabolism	00591		2.868e-10	%
Sma3	Xylene degradation	00622		2.868e-10	%
Sma3	Chloroalkane and chloroalkene degradation	00625		2.868e-10	%
Sma3	Nitrotoluene degradation	00633		2.868e-10	%
Sma3	Butanoate metabolism	00650		2.868e-10	%
Sma3	Carbon fixation pathways in prokaryotes	00720		2.868e-10	%
Sma3	Retinol metabolism	00830		2.868e-10	%
Sma3	Isoquinoline alkaloid biosynthesis	00950		2.868e-10	%
Sma3	Glucosinolate biosynthesis	00966		2.868e-10	%
Sma3	Insect hormone biosynthesis	00981		2.868e-10	%
Sma3	Biosynthesis of unsaturated fatty acids	01040		2.868e-10	%
Sma3	Biosynthesis of type II polyketide backbone	01056		2.868e-10	%
Sma3	Biosynthesis of type II polyketide products	01057		2.868e-10	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063		2.868e-10	%
Sma3	Metabolic pathways	01100		2.868e-10	%
Sma3	Biosynthesis of secondary metabolites	01110		2.868e-10	%
Sma3	Alcohol dehydrogenase.	EC:1.1.1.1	-	1.21773e-42	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010		1.21773e-42	%
Sma3	Fatty acid metabolism	00071		1.21773e-42	%
Sma3	Glycine, serine and threonine metabolism	00260		1.21773e-42	%
Sma3	Tyrosine metabolism	00350		1.21773e-42	%
Sma3	Chloroalkane and chloroalkene degradation	00625		1.21773e-42	%
Sma3	Naphthalene degradation	00626		1.21773e-42	%
Sma3	Retinol metabolism	00830		1.21773e-42	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980		1.21773e-42	%
Sma3	Drug metabolism - cytochrome P450	00982		1.21773e-42	%
Sma3	Metabolic pathways	01100		1.21773e-42	%
Sma3	Biosynthesis of secondary metabolites	01110		1.21773e-42	%
Sma3	S-(hydroxymethyl)glutathione dehydrogenase.	EC:1.1.1.284	-	3.705e-23	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Methane metabolism	00680		3.705e-23	%

Source	Gene names
Sma3	ADH; ADH1; ADH2; ADH3; ADH6; ADH7; ADHIII; Adh; Adh1; Adh2; Adh4; AdhC2; AdhC3; AdhC4; AdhC5; At1g32780; At1g64710; At1g77120; At5g24760; At5g43940; CHLREDRAFT_129874; F13O11.3; F22K20.19; F6N18.16; FDH; FDH1; GSH-FDH1; GSH-FDH2; GSVIVT00000501001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	alcohol dehydrogenase (NAD) activity	GO:0004022	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	S-(hydroxymethyl)glutathione dehydrogenase activity	GO:0051903	Molecular Function	-
Sma3	S-nitrosoglutathione reductase activity	GO:0080007	Molecular Function	-
Sma3	response to hypoxia	GO:0001666	Biological Process	-
Sma3	ethanol oxidation	GO:0006069	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-
Sma3	formaldehyde metabolic process	GO:0046292	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	seed development	GO:0048316	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aliphatic acid kinase, short-chain	IPR000890	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase	IPR014183	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G32780.1	GroES-like zinc-binding dehydrogenase family protein chr1:11869977-11872595 REVERSE LENGTH=394	60%
RefSeq	Arabidopsis thaliana	NP_564409.1	alcohol dehydrogenase-like 3 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002317673.1	predicted protein, partial [Populus trichocarpa]	61%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
769	20		80		0.995493
941	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain