SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22548

Length: 1507 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene22548

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cysteine proteinase-like protein [Arabidopsis thaliana] dbj\|BAC42026.1\| putative auxin-regulated protein [Arabidopsis thaliana] gb\|AAO63317.1\| At2g38025 [Arabidopsis thaliana] gb\|AEC09481.1\| cysteine proteinase-like protein [Arabidopsis thaliana]	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ovarian tumour, otubain	IPR003323	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G38025.1	Cysteine proteinases superfamily protein chr2:15915239-15916692 REVERSE LENGTH=234	53%
RefSeq	Arabidopsis thaliana	NP_850290.1	cysteine proteinase-like protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002323553.1	predicted protein, partial [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ98

Fln msg:

Fln protein: MAEHNKSLTEILVDNLRNGSAEFEIAGSEASSSSKLALPFASIASVFDAFTSARSSVSSLFFARMESPQRGTPPAMKKIEHFSVQRVRGDGRCMFRSLVKGMAANKGLSLSPRAEEEDADELRLAVSEAVCGSEKERRTYEEALIAITVEESLKQYCQKIPHPNFWGGESELLVLSKMLSQPIIVYIPESEAKQRGKWGTGFIPIAEYGVEFMKPTKQRKGRKPVRLLYSGSNHYDLLI*

Protein Length: 241

Fln nts: AAGTATTAACTATTGGGTTCGTCCTCATCATCGACGTATTCACTGATTTAGTTTAAGCTGCAAAGCGGCAATCACAAGCGACAGGCCGTGTTAAGAAGTCCAGTTCGGCC_-_ATGGCGGAGCACAATAAATCTTTGACGGAGATTCTGGTGGACAATCTCAGAAATGGAAGTGCAGAATTCGAGATTGCGGGTTCAGAGGCGTCTTCATCATCTAAGCTGGCACTGCCATTCGCATCCATTGCGTCTGTATTTGATGCTTTTACTAGTGCTCGAAGCAGCGTTAGCTCCCTCTTCTTCGCTCGAATGGAGTCGCCGCAGCGTGGAACACCTCCGGCTATGAAGAAGATAGAGCATTTTAGCGTGCAAAGGGTTCGGGGAGACGGTCGCTGTATGTTCCGAAGTTTGGTAAAGGGAATGGCAGCGAATAAGGGTCTTTCTCTTAGTCCAAGAGCAGAAGAGGAGGATGCAGATGAATTGCGATTGGCTGTAAGTGAAGCTGTATGTGGAAGTGAAAAAGAACGCCGCACATATGAAGAAGCACTTATTGCAATAACAGTTGAGGAGTCCTTGAAGCAATATTGCCAGAAAATTCCGCACCCAAACTTTTGGGGGGGCGAGTCTGAGTTATTGGTATTGTCGAAGATGTTGTCGCAACCAATCATTGTGTACATACCAGAGTCCGAGGCAAAACAAAGAGGAAAGTGGGGAACAGGCTTTATTCCAATTGCTGAATATGGTGTAGAATTCATGAAGCCCACAAAACAAAGGAAAGGTCGAAAGCCAGTGAGGCTTCTGTACAGTGGAAGCAATCACTATGATCTACTTATTTGA___ATTTGTAACATTCAACATTTTGCTGTGTGTCAAGTGAGTGGAGACTAAATCACTCTCCCAGAGGCTGGGTTTGATCAAGGTATCCCTAAGTTGGTTTATGCTAGTATGAAGGCATCATATGGCTCAGCTCTAACCATCCATGGTAGTAATCATTTGCCAACTTCACTACGAGAGTAGAAAACATTCAACATGGGAACTGAAAACCATAACGAGAACACTTGTAATCATAAGTGCTGTAGAAATGGGAAATAAATTGCTAATGCAAATCAGATTTTCCTTCTGCCAAATCCGCTGTTGCTATGGAACATATAATCTTGGAGCACATACAAGTGTAGTTAAGCCTAAAATTTTCTCTGGAAGGCCCCTAACTTGTAGCAATGGTGTGTGGAACAATAAATCTGGAATATAGTCAACTCTCCAGGCAGGGAAAGTTTTCCAGCAAGAAACATGGGAGAGAAGGCCTAGTTTCCCCAACTTAGTTCACCATCTTGTGCAAGCACGACTCATTAGGATAATAAGTGTAGATGCAAATATTGTGATAAAAACACAAATCTTTTTGTGCAAGAGATGATACTCAGAGACAAATATTACAGTATTAAACAATTTTGTCATACCAGTGGACCATGAAAGGAATATTATTATTGGTGTCACCTATATCTTATACTATTTTCCTTTTA

Fln Alignment:

Contig22548___MAEHNKSLTEILVDNLRNGSAEFEIAGSEASSSSKLALPFASIASVFDAFTSARSSVSSLFFARMESPQRGTPPAMKKIEHFSVQRVRGDGRCMFRSLVKGMAANKGLSLSPXXXXXXXXXXXXXVSEAVCGSEKERRTYEEALIAITVEESLKQYCQKIPHPNFWGGESELLVLSKMLSQPIIVYIPESEAKQRGKWGTGFIPIAEYGVEFMKPTKQRKGRKPVRLLYSGSNHYDLLI
A9NQ98_______________MAELQKSLTETLVDNLRNGSAAFEFVSPEASLSYKLALPFASISSVFGAFTAAQSSVSSLFFARMELPRRGTPPAMKKIEHFSVQKVRGDGRCMFRSLVKGMATNKGLSLSPREEEEDADELRIAVSEAVCGSEKERRTYEEALIAITVEESLKQYCQKIQHPNFWGGESELLVLSKMLSQPIIVYIPESEAKQGGKWGTGFIPIAEYGEEFMKPSKQRKGRKPVRLLYSGSNHYDLLI

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
209	50	50			1.0
222		50		50	1.0
327		40		60	1.0
448			88	11	0.923564
449	44		55		1.0
450			88	11	0.923564
480	44			55	1.0
495			55	44	1.0
523	14		85		0.993533
557		42		57	1.0
592	33	66			1.0
650	33		66		0.997452
771			75	25	0.996473
868		80	20		0.995493
1102		18		81	1.0
1113	20	60		20	0.999999
1114		90	10		0.90298
1115	87	12			0.992554
1116	85			14	0.993533
1195		75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain