SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22426

Length: 1813 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene22426 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=2 Tax=Physcomitrella patens RepID=A9SRK5_PHYPA	-	-	1.0e-35	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Sma3	Homeobox protein, putative	-	-	2.837e-16	-

Source	Gene names
Sma3	ATHB-1; ATHB-12; ATHB-13; ATHB-16; ATHB-21; ATHB-22; ATHB-23; ATHB-3; ATHB-40; ATHB-51; At1g26960; At1g69780; At2g18550; At2g36610; At3g01470; At3g61890; At4g36740; At4g40060; At5g03790; At5g15150; C7A10.620; CPHB-5; CPHB-6; Crhb11; Crhb4; Crhb5; Crhb6; C

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to blue light	GO:0009637	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	bract formation	GO:0010434	Biological Process	-
Sma3	negative regulation of cell growth	GO:0030308	Biological Process	-
Sma3		GO:0045941	Biological Process	-
Sma3	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	-
Sma3	photoperiodism, flowering	GO:0048573	Biological Process	-
Sma3	cotyledon morphogenesis	GO:0048826	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3	HD-ZIP protein, N-terminal	IPR006712	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB83

Fln msg:

Fln protein: MAWNMRPCLDPSNFMFMQAAEGGGASGTDALLTVLNSCPLPSLRGLQEGSRMSNNIAKRPFYSMFDCYPDDMEEKNMAEFGNSISNLQLEKKRRLSAEQVRSLEKSFEMENKLEPERKMQLAQQLGLQPRQVAVWFQNRRARWKTKQLEHVYDALKQEFDTVIAEKEKLKAEVAQLTAKLESYKNNGMTGTGMGLNKIKADSTEHEEYVQTHVDRVVAETSHSLSEVEKPIQEESCMQEEVSKKMKDFSGSSDTSTENGDTRSSHAAYTDEPSLVRLPETSHGESSNTMYNEQQIKLKYDDGVEEFYNCINMLRFDDPYGNVPWC*

Protein Length: 327

Fln nts: ATGGGGACCAAGAGCCTCTGCTTCAAAGCTTGCTTGTCAAACTAAAATGTCCAATGCCATGGCCATGGCCATTGCCATAGCCAGTGCCAAGGACTGAAACATGACTGAGGAACACTTCGGTTAGGCGTCTGAAACGAGAAAGTTTTGTTAGTAATGATAAGAGCAATGCGGGGATGGGCAATTCTCTTTGAAAAAAGCGCTCTCGCTCGTCCTATCGCAAGCCCAGTACAATTGATTAATTTGGAGTATAGGTGGCTTCCATGAATTGGGTTTGAAGTTCTGCTGTTGTTTATGGTAGTTCGTGTGTATATGTCGTGCAACAAATAGGCCTTAGAGGACACTTTCAATTTCCAAGTTCCATGTCCTCGCCCTGTTCACCAGGCCCATTTGAGTTTCAGGATTGTTGCAAATAGACCTGAAAAAAGATTTGTACTCAATTAATTTTCCCATCTTTGTCGCGTCGGGTAGTCGTCATCACAGTGTCCAAAGGAGTACAAGCGGGATAGATTGTTTAGAGTCCGGCATTAGAGTTTAAATT_-_ATGGCGTGGAATATGCGGCCTTGCTTGGACCCAAGCAATTTTATGTTTATGCAAGCAGCTGAAGGTGGCGGTGCCTCTGGTACTGATGCGCTCTTGACAGTGCTCAATTCCTGTCCACTTCCTTCTCTCAGAGGGCTGCAAGAAGGGAGTCGAATGAGCAACAATATTGCGAAACGACCCTTTTACAGTATGTTTGATTGCTATCCTGATGACATGGAAGAGAAGAATATGGCTGAATTCGGCAACTCTATTTCGAATCTGCAGTTAGAGAAGAAGAGAAGGCTGTCTGCAGAGCAGGTTCGTTCATTAGAAAAGAGCTTCGAGATGGAGAACAAACTCGAACCCGAGAGGAAAATGCAGTTAGCTCAGCAGCTTGGACTGCAACCACGGCAGGTGGCTGTTTGGTTCCAGAACAGGCGAGCTCGCTGGAAGACAAAGCAGCTTGAGCATGTTTATGACGCTCTCAAGCAAGAATTTGACACAGTTATAGCCGAAAAAGAGAAGCTCAAAGCTGAGGTTGCGCAGCTCACTGCTAAGCTAGAAAGCTATAAAAACAATGGAATGACAGGAACTGGTATGGGCTTGAACAAGATTAAAGCTGATAGTACTGAACACGAGGAATATGTTCAAACACATGTTGACAGAGTTGTTGCGGAGACGAGCCATTCACTGAGCGAAGTAGAGAAACCTATACAGGAGGAATCATGCATGCAGGAAGAAGTGTCAAAGAAGATGAAAGATTTCTCTGGGAGCTCTGATACAAGTACTGAAAATGGCGATACAAGATCGAGTCATGCAGCTTATACCGACGAGCCCAGTCTGGTCCGATTGCCTGAAACGTCCCACGGGGAATCTTCAAACACCATGTACAACGAACAACAGATTAAACTCAAGTACGATGATGGAGTAGAGGAGTTTTACAACTGTATCAACATGCTTAGGTTCGACGACCCATATGGCAATGTGCCATGGTGCTGA___AGTTGTGTAAAACTATTAGTGTAATTAATACCTGTGTACCTAGATATAGCCGTTGGAATCCTTTTATATCTCTTCTTATACACTTTCTATATATAATTTGACCTCTGGCTGGGTAATTGTTGCAGAAAGCTTAATTACAGTCATGAGGCTGCTCATTAAGCTGAACCTTCTGGTTATAGACTAGGTGTTGAAGGCTTTGGCTGGGAGAAAAGCGCTAAGTATCGGACTTTATTTCATTGACCCTGAATGTAAAGATAATTTTTTTTTTTAATCAATGGGAATGTCTCTTATTTATTT

Fln Alignment:

Contig22426___DALLTVLNSCPLPSLRGLQEGSRMSNNIAKRPFYSMFDCYPDDMEEKNMAEFGNSISNLQLEKKRRLSAEQVRSLEKSFEMENKLEPERKMQLAQQLGLQPRQVAVWFQNRRARWKTKQLEHVYDALKQ-------EFDTVIAEKEKLKAEVAQLTAKLESYKXXXXXXXXXGLNKIKADSTEHEEYVQTHV-----DRVVAETSHSLSEVEKPIQEESCMQEEVSKKMKDFSGSSDTSTENG--------DTRSSHAAYTDEPSLVRLPETSHGESSN-----TMYNEQQIKLK---YDDGVEEFYNCINMLRFDDPYGNVPW
D5AB83_______________DALEALLSSPVFNGSRSVANLEEVIGNVSKRPFYNSFD-----QEETGDEDLDDCIH--PPEKKRRLTADQVQFLERSFEIENKLEPERKIQLAKDLGLQPRQVAVWFQNRRARWKTKQLERDYDILKSRYENLRVDYDSLLKEKDKLRAEVTFLTGKLHSKDCDLEA------------QTKDSEYVDKKVFPQPASQCVEKFERGTSIKDTP---PSCKHEDLLSSGTDSSGVLDEDSPHHVDCGHSSLDHVNSHLFEADQSDLSHADEEEEEEGMSEKLLPQTYTYHLLKVEDGPYPDASIASYN--EMFAMEDQVPLGPW

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
238		20	80		0.995493
304	16	83			0.994512
305		83		16	0.994512
306	83		16		0.994512
417	28		71		1.0
462			87	12	0.992554
464	12		87		0.992554
465		87	12		0.992554
469	12			87	0.992554
471	12		87		0.992554
473		12		87	0.992554
474	87	12			0.992554
479		87	12		0.992554
484		11		88	0.923564
488			11	88	0.923564
617	14			85	0.999981
622	14			85	0.999981
624		85	14		0.999981
647	10			90	0.90298
648			10	90	0.90298
653		90	10		0.90298
654	80	20			0.999996
655		20		80	0.999996
658			10	90	0.90298
659			11	88	0.923564
660		88		11	0.923564
662	12			87	0.992554
664	12		87		0.992554
665	12			87	0.992554
1399	25			75	0.996473
1403			75	25	0.996473
1420	25	75			0.996473
1422			75	25	0.996473
1466			50	50	1.0
1651		20	80		0.995493
1708	20	20		60	0.99255
1709			25	75	0.996473
1710		75		25	0.996473
1711		75	25		0.996473
1712	25			75	0.996473
1716		25		75	0.996473
1719	25			75	0.996473
1722			25	75	0.996473
1728	25			75	0.996473
1730		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain