SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22401

Length: 640 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene22401 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Low molecular weight heat-shock protein n=7 Tax=Pinaceae RepID=Q40935_PSEMZ	-	-	9.0e-36	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Heat-shock protein, putative	-	-	4.106e-40	-

Source	Gene names
Sma3	At1g07400; At1g07400/F22G5_20; At1g53540; At1g59860; At2g29500; At3g46230; At5g59720; BcHSP; BcHSP17.6; CJHSP17; F12M12_200; F22G10.20; F23H11.18; GSVIVT00001312001; GSVIVT00018308001; GSVIVT00018328001; GSVIVT00018349001; GSVIVT00018355001; GSVIVT0001835

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G53540.1	HSP20-like chaperones superfamily protein chr1:19980510-19980983 FORWARD LENGTH=157	4.0e-36	73%
RefSeq	Arabidopsis thaliana	NP_175759.1	HSP20-like chaperone [Arabidopsis thaliana]	5.0e-36	73%
RefSeq	Populus trichocarpa	XP_002315187.1	predicted protein [Populus trichocarpa]	1.0e-38	80%

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
287		25		75	0.996473
429	20		80		0.995493
505		20		80	0.995493
506		20	80		0.995493
507	20	80			0.995493
508			80	20	0.995493
567		33		66	0.997452
568		33		66	0.997452
570	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain