SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22275

Length: 532 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene22275
TGCGACGATATTTGAGTACTCTCTCAATCAAAACAACCTCGATTACTATGACATCTCTCTGGTGGATGGATTCAACCTGCCAGTGTCGATCATTCCCTCCAACTCTTCGTGCCACGCAATCGCCTGCAGCAGCAATATAAGTGCCATCTGCCCCGCTGAATTGAGGGTTTCCGGCGGATGCGATGCCGCCTGCAATCGTTTTAATACATCACAATATTGCTGTACGGGGCAATATTTCAACAATTGCGGTCCGACTAATTATTCGATGGTTTTCAAGCGCCAATGCCCCCAGGCCTACACCTATGCAAAGGACGACGCCACCAGCATGTTCACTTGCCCCGGAAGCACCGACTATAAAGTCGTTTTCTGCGGCGGCAATGCCACCTCCCTGCAAGGACAAAATATTACAGTGGTGAGTCCCAATATGACACTGACACCGTATGGCTCCCCCACAATGTCGCCTACAATGCCGCCCAGATCGACGAATTTGTCACCGGGCAATTCGACACACACGACCGGTAAAAAGACATCC

Ace file of the UniGene sp_v3.0_unigene22275 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein n=1 Tax=Pinus taeda RepID=A5HIY3_PINTA	-	-	68%
FL-Next	tr=Thaumatin-like protein; Pinus taeda (Loblolly pine).	-	-	68%
Sma3	Thaumatin-like protein	-	-	-

Source	Gene names
Sma3	5A1A.16; AP24; At4g11650; Cry j 3.1; Cry j 3.2; Cry j 3.3; Cry j 3.4; Cry j 3.6; Cry j 3.7; Cry j 3.8; GSVIVT00000591001; GSVIVT00001102001; GSVIVT00001103001; GSVIVT00001104001; GSVIVT00001105001; GSVIVT00001108001; GSVIVT00001109001; GSVIVT00001110001;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytoplasmic vesicle	GO:0031410	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	serine-type endopeptidase inhibitor activity	GO:0004867	Molecular Function	-
Sma3	xenobiotic metabolic process	GO:0006805	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G11650.1	ATOSM34, OSM34 osmotin 34 chr4:7025127-7026113 REVERSE LENGTH=244	5.00264e-43	55%
RefSeq	Arabidopsis thaliana	NP_192902.1	osmotin-like protein OSM34 [Arabidopsis thaliana]	7.00649e-43	55%
RefSeq	Populus trichocarpa	XP_002325077.1	predicted protein [Populus trichocarpa]	1.4013e-45	55%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A5HIY3

Fln msg: STOP codon was not found. Distance to subject end: 53 aas, your sequence is shorter than subject: 177 - 234

Fln protein: ATIFEYSLNQNNLDYYDISLVDGFNLPVSIIPSNSSCHAIACSSNISAICPAELRVSGGCDAACNRFNTSQYCCTGQYFNNCGPTNYSMVFKRQCPQAYTYAKDDATSMFTCPGSTDYKVVFCGGNATSLQGQNITVVSPNMTLTPYGSPTMSPTMPPRSTNLSPGNSTHTTGKKTS

Protein Length: 178

Fln nts: TGCGACGATATTTGAGTACTCTCTCAATCAAAACAACCTCGATTACTATGACATCTCTCTGGTGGATGGATTCAACCTGCCAGTGTCGATCATTCCCTCCAACTCTTCGTGCCACGCAATCGCCTGCAGCAGCAATATAAGTGCCATCTGCCCCGCTGAATTGAGGGTTTCCGGCGGATGCGATGCCGCCTGCAATCGTTTTAATACATCACAATATTGCTGTACGGGGCAATATTTCAACAATTGCGGTCCGACTAATTATTCGATGGTTTTCAAGCGCCAATGCCCCCAGGCCTACACCTATGCAAAGGACGACGCCACCAGCATGTTCACTTGCCCCGGAAGCACCGACTATAAAGTCGTTTTCTGCGGCGGCAATGCCACCTCCCTGCAAGGACAAAATATTACAGTGGTGAGTCCCAATATGACACTGACACCGTATGGCTCCCCCACAATGTCGCCTACAATGCCGCCCAGATCGACGAATTTGTCACCGGGCAATTCGACACACACGACCGGTAAAAAGACATCC

Fln Alignment:

Contig22275___ATIFEYSLNQ-NNLDYYDISLVDGFNLPVSIIPSNSSCHAIACSSNISAICPAELRVSGGCDAACNRFNTSQYCCTGQYFNNCGPTNYSMVFKRQCPQAYTYAKDDATSMFTCPGSTDYKVVFCG
A5HIY3_______________ATLFEYGLNKYQNLDFYDISLVDGFNIPLSVTPSDSSCKVIGCTTDINAVCPAELKVTDGCKSACAEFNTPQYCCTGDYLNNCSPTNYSQFFKGQCPQAYSYAKDDATSTFTCPGGANYNVVFCG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
357			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain