SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22261

Length: 1098 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene22261 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Expansin-like protein n=1 Tax=Cunninghamia lanceolata RepID=A2ICD7_CUNLA	-	-	0.0	53%
FL-Next	tr=Expansin-like protein; Cunninghamia lanceolata (China fir).	-	-	0.0	53%
Sma3	Expansin-like protein	-	-	1.046e-14	-

Source	Gene names
Sma3	At3g45960; At3g45970; At4g38400; EXLA1; EXLA2; EXLA3; EXLB1; EXPL1; EXPL2; EXPL3; EXPR1; ExpB2.1; F16L2_180; F22I13.170; GSVIVT00005201001; GSVIVT00008223001; GSVIVT00013491001; GSVIVT00036225001; LOC_Os03g04020; LOC_Os07g29290; LOC_Os07g31390; LOC_Os10g3

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	sexual reproduction	GO:0019953	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAC motif	IPR001610	-	-
Sma3		IPR005132	-	-
Sma3	Major pollen allergen Lol pI	IPR005795	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G38400.1	ATEXLA2, EXPL2, ATEXPL2, ATHEXP BETA 2.2, EXLA2 expansin-like A2 chr4:17978675-17979665 REVERSE LENGTH=265	45%
RefSeq	Arabidopsis thaliana	NP_195553.1	expansin-like A2 [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002313682.1	hypothetical protein POPTRDRAFT_832983 [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A2ICD7

Fln msg:

Fln protein: MPSQFNSSIMATQAPVVFVLYCILGVDLLIMFPSLALGCTSCVHQSKLAYYAYPGAVDVGACGYGSFAATLYGGNVGGSSPDLYRNGVACGACYQMRCTDSKLCTKSGTTIVVTDFTESSQTDFVVTRSTFSSMALPDQGDQLLKAGIIDIEYKRVPCQYKDQNMSVKVDKLSRYPNYLAVQFLYQGGQTDIVSVDVEQVGSSEKHDLKRNYGAVWDIENPPEGPLQFGFVIFSGYNGKRVWPTKPVLPSDWKVGGVYDSGLQINDVSLEKCSPCDDNDDGWGHTPIP*

Protein Length: 290

Fln nts: AACTATAATGTTTGAAACATATCCTAATAGTCCTCCATAGTCACTAGCCA_-_ATGCCAAGCCAATTCAATTCAAGCATCATGGCCACTCAAGCACCAGTTGTCTTCGTCCTTTATTGCATTTTGGGTGTAGATCTTCTCATCATGTTCCCAAGTTTAGCGTTAGGTTGCACCAGCTGTGTCCATCAATCTAAACTAGCCTATTATGCTTACCCAGGGGCAGTTGATGTTGGCGCCTGCGGATATGGATCATTTGCAGCAACTCTCTATGGCGGGAATGTAGGAGGATCCAGCCCTGATCTCTACAGAAATGGCGTTGCGTGTGGCGCATGCTATCAGATGAGATGCACAGACTCCAAATTATGCACCAAGTCAGGGACTACAATAGTGGTTACGGACTTCACAGAGAGCAGCCAAACAGATTTTGTTGTAACCCGCAGCACATTCTCAAGCATGGCACTACCAGATCAGGGGGACCAGCTTCTTAAGGCCGGGATTATAGATATCGAATATAAAAGGGTCCCTTGCCAGTACAAGGACCAGAATATGTCGGTGAAGGTGGACAAACTGAGCCGGTACCCTAACTATCTTGCTGTGCAATTTCTGTACCAAGGAGGCCAGACAGACATAGTTTCTGTGGATGTTGAGCAGGTGGGTTCTTCTGAGAAACATGACTTGAAGCGAAACTATGGCGCAGTTTGGGACATAGAGAATCCGCCAGAGGGTCCTCTGCAGTTTGGATTTGTGATATTCAGCGGGTACAATGGGAAAAGGGTGTGGCCGACAAAGCCTGTGCTTCCCTCTGACTGGAAGGTAGGGGGTGTTTATGATTCTGGACTTCAAATCAATGACGTTTCTTTGGAGAAGTGTAGTCCGTGTGATGACAACGACGATGGATGGGGCCACACACCAATACCATGA___ACAGACGTATAAAAATTGTCAACTGCGATCGTACATGGTTGAATCCATGGATTCAAGAAGCTAATGGGGAAACTCAGATCGCTTTGTCTTTGAATCAACGTTGTAGAGAAGTCATCATCACCACTTTGTATATGTAATAAGTGTTATAAATAAAGTTTCGCAGGTTGGCGTAATTTGTTCG

Fln Alignment:

Contig22261___CILGVDLLIMFP-SLALGCTSCVHQSKLAYYAYPGAVDVGACGYGSFAATLYGGNVGGSSPDLYRNGVACGACYQMRCTDSKLCTKSGTTIVVTDFTESSQTDFVVTRSTFSSMALPDQGDQLLKAGIIDIEYKRVPCQYKDQNMSVKVDKLSRYPNYLAVQFLYQGGQTDIVSVDVEQVGSSEKHDLKRNYGAVWDIENPPEGPLQFGFVIFSGYNGKRVWPTKPVLPSDWKVGGVYDSGLQINDVSLEKCSPCDDND
A2ICD7_______________CCAGWILMLMFILPTAFCCDRCLHKSKVSYTSSSQPVNAGACGYESLAGTLNSGDVATASAKIYREGVGCGGCYQIRCTDPAICSKSGVKVVVSDLTQNNQTDFVLSTRTFSKMAQPTKSSQLIKMGLVDTEYKRIPCEYPGKNMTVKIDKMSNYPYFLAVQFLYQGGQTDITGVEVAQVGTSNWKFMTRNYGAVWSMQQPPEGPMSLRVLVTSGYDGFWVWAKTAVLPSNWKVGSVYDSGVQIKEIAQEGCSPCDSQD

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
293		14		85	0.993533
300	85		14		0.993533
312	77		22		0.999999
314	22		77		0.999999
325		77	22		0.999999
329	22	77			0.999999
337		77	22		0.999999
344	77	22			0.999999
352	88		11		0.923564
377		22	77		0.999999
399		11	88		0.923564
477	14		85		0.993533
525	14		85		0.993533
808		33	66		1.0
810	33		66		1.0
833	28	71			1.0
844			85	14	0.993533
889			60	40	1.0
968			65	35	1.0
971		68		31	1.0
1043		20		80	0.999996
1044	10			90	0.90298
1045	10		90		0.90298
1046			90	10	0.90298
1047		90	10		0.90298
1049		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain