SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22260

Length: 1135 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene22260 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Putative potassium transporter 12; AltName: Full=OsHAK12 emb\|CAD21002.1\| putative potasium transporter [Oryza sativa Japonica Group] gb\|EAZ41864.1\| hypothetical protein OsJ_26409 [Oryza sativa Japonica Group]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Potassium transporter, putative	-	-	2.45227e-43	-

Source	Gene names
Sma3	6J23.11; At1g31120; At1g60160; At1g70300; At2g30070; At2g35060; At2g40540; At3g02050; At4g13420; At4g19960; At4g23640; At4g33530; At5g09400; At5g14880; B1026C12.31-1; B1026C12.31-2; CHLREDRAFT_121823; CHLREDRAFT_123407; F17M5.1; F17O7.17; F18F4.60; F1C9.1

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	potassium:sodium symporter activity	GO:0009674	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, NF-X1-type	IPR000967	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G31120.1	KUP10 K+ uptake permease 10 chr1:11104375-11107361 REVERSE LENGTH=796	68%
RefSeq	Arabidopsis thaliana	NP_181051.1	Potassium transporter 11 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002329922.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
655	14		85		0.993533
731		12	87		0.992554
734	87			12	0.992554
737	85			14	0.993533
738		85	14		0.993533
739	14	85			0.993533
740	85		14		0.993533
741	85			14	0.993533
742		85	14		0.993533
744		14	85		0.993533
747		14	85		0.993533
748	85	14			0.993533
753	83			16	0.994512
756		16		83	0.994512
757			83	16	0.994512
782	25		25		0.995533
785	75		25		0.996473
786		75		25	0.996473
867		50		50	1.0
868	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain