SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22201

Length: 367 nt

UniGene Fasta

>sp_v3.0_unigene22201
TGCTGCATGTGGTGAGCATGGGGATGAACTCGTTCGATGCGACGAAATGCATGTATTGGTGGTTGATGATTGCCTGATAGAACGGAAGGTAATTGAAAAGCTTTTGAAGACTAACTTTTTCAAAGTTACCTCTGTAGATAGTGCCGAAAGAGCGCTAGAAGTCTTGGGGTTTCATGAAGAGCAGTCGACATGTGCGACCACTAACGCGTTCAAGGTTAACATGATCATTACCGATTATTGTATGCCAGGAATGACGGGCTATGATCTGCTGAAGAAAGTCAAGGAAACCAAATGTCTGAAGGAAATTCCTGTTGTGATAATATCTTCAGAAAATGTGCCGCAGAGAATAACAAGCTGTCTGGCAGAA

Ace file of the UniGene sp_v3.0_unigene22201

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Two-component response regulator ARR17 n=2 Tax=Arabidopsis RepID=ARR17_ARATH	-	-	5.0e-32	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Type-a response regulator	-	-	3.277e-39	-

Source	Gene names
Sma3	ARR15; ARR16; ARR17; ARR3; ARR4; ARR5; ARR6; ARR7; ARR8; ARR9; ATRR1; ATRR2; ATRR3; ATRR4; At1g10470; At1g19050; At1g59940; At1g74890; At2g40670; At2g41310; At3g48100; At3g56380; At3g57040; At5g62920; B1250G12.17; F13H10.14; F14D16.20; F23H11.25; F24I3.12

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	two-component response regulator activity	GO:0000156	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	circadian rhythm	GO:0007623	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	cytokinin mediated signaling pathway	GO:0009736	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	red or far-red light signaling pathway	GO:0010017	Biological Process	-
Sma3	response to red light	GO:0010114	Biological Process	-
Sma3	red light signaling pathway	GO:0010161	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	stem cell maintenance	GO:0019827	Biological Process	-
Sma3	regulation of circadian rhythm	GO:0042752	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G56380.1	ARR17, RR17 response regulator 17 chr3:20905480-20906368 FORWARD LENGTH=153	1.99965e-42	57%
RefSeq	Arabidopsis thaliana	NP_567037.1	two-component response regulator ARR17 [Arabidopsis thaliana]	1.99965e-42	57%
RefSeq	Populus trichocarpa	XP_002325489.1	type-a response regulator [Populus trichocarpa]	1.99993e-41	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWL1

Fln msg: Distance to subject end: 69 aas, your sequence is shorter than subject: 122 - 208

Fln protein: AACGEHGDELVRCDEMHVLVVDDCLIERKVIEKLLKTNFFKVTSVDSAERALEVLGFHEEQSTCATTNAFKVNMIITDYCMPGMTGYDLLKKVKETKCLKEIPVVIISSENVPQRITSCLAE

Protein Length: 123

Fln nts: TGCTGCATGTGGTGAGCATGGGGATGAACTCGTTCGATGCGACGAAATGCATGTATTGGTGGTTGATGATTGCCTGATAGAACGGAAGGTAATTGAAAAGCTTTTGAAGACTAACTTTTTCAAAGTTACCTCTGTAGATAGTGCCGAAAGAGCGCTAGAAGTCTTGGGGTTTCATGAAGAGCAGTCGACATGTGCGACCACTAACGCGTTCAAGGTTAACATGATCATTACCGATTATTGTATGCCAGGAATGACGGGCTATGATCTGCTGAAGAAAGTCAAGGAAACCAAATGTCTGAAGGAAATTCCTGTTGTGATAATATCTTCAGAAAATGTGCCGCAGAGAATAACAAGCTGTCTGGCAGAA

Fln Alignment:

Contig22201___AACGEHGDELVRCDEMHVLVVDDCLIERKVIEKLLKTNFFKVTSVDSAERALEVLGFHEEQSTCATTNAFKVNMIITDYCMPGMTGYDLLKKVKETKCLKEIPVVIISSENVPQRITSCLA
A9NWL1_______________AACGENGNEPVQCDEMHVLAVDDCLIERKVIEKLLKTNFFKVTTVDSAERALEVLGFHEEQSTCAASNAFKVNMIITDYCMPGMTGYDLLKKVQETKCLKEIPVVIISSENVPQRITSCLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain