SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22156

Length: 1286 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene22156

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cinnamyl alcohol dehydrogenase n=1 Tax=Eucommia ulmoides RepID=Q506M2_EUCUL	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Cinnamoyl-CoA reductase	-	-	1.59748e-43	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dihydrokaempferol 4-reductase.	EC:1.1.1.219	-	3.324e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Flavonoid biosynthesis	00941		3.324e-18	%
Sma3	Biosynthesis of phenylpropanoids	01061		3.324e-18	%
Sma3	Metabolic pathways	01100		3.324e-18	%
Sma3	Biosynthesis of secondary metabolites	01110		3.324e-18	%
Sma3	Cinnamoyl-CoA reductase.	EC:1.2.1.44	-	8.102e-36	-

Source	KEGGs	Term	e value	Identity
Sma3	Phenylpropanoid biosynthesis	00940	8.102e-36	%
Sma3	Biosynthesis of phenylpropanoids	01061	8.102e-36	%
Sma3	Metabolic pathways	01100	8.102e-36	%
Sma3	Biosynthesis of secondary metabolites	01110	8.102e-36	%

Source	Gene names
Sma3	ADH; ADH2; AT1G15950; At1g09490; At1g09500; At1g15950; At1g51410; At1g80820; At2g02400; At2g33590; At2g33600; At5g58490; B1129H01.17; CAD; CAD1; CAD1-1; CAD1-7; CAD2; CCR; CCR1; CCR2; CCR3; CCR4; CCR6; CCR7; CCRL1; CCRL2; CCRL3; CCRL4; CCRL5; F14J9.14; F1

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	3-beta-hydroxy-delta5-steroid dehydrogenase activity	GO:0003854	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	cinnamoyl-CoA reductase activity	GO:0016621	Molecular Function	-
Sma3	cinnamyl-alcohol dehydrogenase activity	GO:0045551	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	steroid biosynthetic process	GO:0006694	Biological Process	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein chr5:6556493-6558123 FORWARD LENGTH=326	69%
RefSeq	Arabidopsis thaliana	NP_197445.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002298395.1	cinnamoyl CoA reductase-like protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKT7

Fln msg: Overlapping hits, possible frame ERROR between 361 and 298,

Fln protein: MSGRLVCVTGASGFIASWLVKLLLDRGYVVRATLRDIGNPQKTEHLRALEGANERLQLVKANLLDEGTFDAAVDGCEGVFHTASxxxxxxxxxxxxxxxxxxxxxxxVLNACAKASSVKRVVVTSSVAAVTYNFRPRSPDTVVDETWFSDVEYCKQAQAWYLLSKTLAEETAWKFAKEKGIDLVTINPAMVIGRLLQPTLNTSCAAILQLMNGSSTFPNMTFGWVSVKDVAEAHILAFEVPSANGRYLLVEKVAHYSEVVKILSKLYPGCTLPTKCVDDNPFPPTFTVSKERIEKLGLKYTPIEEALRDTVESLKEKKLLNLDSNL*

Protein Length: 328

Fln nts: GGAAACGCTTCAACCGTTGCTGTGATATCGAAATTCCATAGTC_-_ATGAGTGGGAGACTGGTCTGCGTTACCGGAGCCTCGGGATTCATCGCCTCATGGCTGGTGAAGTTGCTGTTGGATCGCGGTTATGTAGTTCGAGCTACCCTTCGTGATATAGGTAATCCTCAGAAGACAGAGCACTTGCGTGCATTGGAAGGAGCCAATGAAAGGCTTCAACTGGTGAAAGCAAATTTACTTGATGAGGGAACTTTTGATGCAGCTGTGGATGGTTGTGAAGGTGTCTTTCACACTGCATCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTCCTTAATGCATGTGCCAAAGCTTCTTCGGTAAAGAGGGTGGTAGTAACATCATCAGTAGCAGCTGTCACATACAATTTTAGGCCTCGATCGCCTGATACAGTAGTTGATGAAACTTGGTTCAGTGATGTAGAGTACTGCAAGCAAGCTCAGGCCTGGTATCTGCTATCAAAGACATTGGCAGAAGAAACTGCATGGAAATTTGCAAAGGAAAAGGGTATCGATCTTGTCACAATAAATCCAGCTATGGTGATTGGCAGGCTTCTACAACCTACTCTGAATACAAGCTGTGCTGCCATTCTACAATTAATGAATGGGTCTTCGACATTTCCAAATATGACATTTGGATGGGTGAGTGTGAAAGATGTAGCAGAGGCACATATTCTAGCATTTGAAGTTCCGTCAGCAAATGGAAGATATCTTTTAGTTGAGAAGGTTGCTCACTACTCAGAAGTTGTGAAGATCCTGAGTAAACTATATCCAGGCTGCACGCTCCCAACAAAGTGTGTTGATGATAATCCCTTTCCCCCTACCTTTACTGTATCAAAGGAAAGAATAGAGAAGTTGGGTCTGAAGTACACTCCTATTGAAGAGGCTCTCAGAGATACTGTTGAAAGCTTGAAGGAAAAGAAGTTGCTCAACTTAGACAGCAATCTGTGA___TTTATCAATACCTGGAAACCTTTGTGTTTTTAAATATATGTCATTGGGCATGCATCTAGCTGTTATTTTGTTGAAAATGAGCTACATCTTCTGTCAAGCACAGCAATGTCCTTGCAAGTCAAACATGTCCTTTGCCTACTTTATTTTTGGATCAATTTTCAAAAACATTTTGGATGAATAAACTTAATATTCTTAGCTGCTTGTTTACTGGGCAACAGCCGAAGTATATCAACGTAGATATAGATGTTTAGGGAGCCAAAAAA

Fln Alignment:

Contig22156___MSGRLVCVTGASGFIASWLVKLLLDRGYVVRATLRDIGNPQKTEHLRALEGANERLQLVKANLLDEGTFDAAVDGCEGVFHTASPxxxxxxxxxxxxxxxxxxxxxNVLNACXXXXXXXXXXXXXXXXXXXYNFRPRSPDTVVDETWFSDVEYCKQAQAWYLLSKTLAEETAWKFAKEKGIDLVTINPAMVIGRLLQPTLNTSCAAILQLMNGSSTFPNMTFGWVSVKDVAEAHILAFEVPSANGRYLLVEKVAHYSEVVKILSKLYPGCTLPTKCVDDNPFPPTFTVSKERIEKLGLKYTPIEEALRDTVESLKEKKLLNLDSN
A9NKT7_______________MSGRLVCVTGASGFIASWLVKLLLHRGYVVRATVRDLGNPEKTKHLHALEGANERLQLVKANLLDEGTFDAAVDGCEGVFHTASPxxxxxxxxxxxxxxxxxxxxxNVLNACAKASSVKRVVVTSSVAAVTYNSRPRSPDTVVDETWFSDAEYCKQVKLWYHLSKTMAEESAWKFAKEKGIDIVTINPAMVIGTLLQPTLNTSCAAILQLMNGSSTYPNMTFGWVSVKDVAEAHILAFEVPSANGRYLLVEKVAHYSELVKILSKLYPGCAVPTKCADDNPFPPTFTVSKERVEKLGLKYTPIEEALRDTVESLKEKKFLNLDSN

SNPs (tot: 4)

Position	A %	C %	T %	Probability
396	14		85	0.993533
423		14	85	0.993533
515	42	57		1.0
540		85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain