SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22130

Length: 564 nt

UniGene Fasta

>sp_v3.0_unigene22130
TGCATGAAGAACTGGACCGTGTGGTGGGAGACTCGCGAAGAGTCTCAGAGTCTGACATTCCAAAGCTGGAGTACTTGCAGGCGGTGGTGAAGGAGGTTCTGAGGATGCACCCACCAGGGCCTCTTCTGTCGTGGGCTCGCCTCGCCACTCACGACGTTGTTGTAGCGGGACGGCACTTTGTTCCAGCAGGCACCACAGCGATGGTAAACATGTGGGCTATAACGCACGACCATGACATCTGGAACAAACCCCACACCTTCTGTCCCGGCAGATTTCTTGTCGCCGCAGGAGGTGAGGAAGTGAACATCATGGGAATGGATTTGAGGTTGGCGCCCTTTGGTTCCGGGAGGCGAGTATGCCCTGGAAAAGCTTTGGGACTTGCCACAATTCACCTCTGGCTCGCCCGTCTCCTTCACCACTTTCAATGGATCCCTGCATTGCCCCACCAACCAGTGGATCTCTCAGAGGTGTTGAGACTTTCATGTGAGATGCAAGTACCCTTATCCGCCAAGGTCATACCTAGATCAGTTAACTTCAATATGTCCATGGCCAATATCCATTAAC

Ace file of the UniGene sp_v3.0_unigene22130

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 78A4 n=1 Tax=Pinus radiata RepID=C78A4_PINRA	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Cytochrome P450	-	-	1.109e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	2.023e-10	-
Sma3	Flavonoid 3'-monooxygenase.	EC:1.14.13.21	-	1.847e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Flavonoid biosynthesis	00941		1.847e-09	%
Sma3	Flavone and flavonol biosynthesis	00944		1.847e-09	%
Sma3	Biosynthesis of phenylpropanoids	01061		1.847e-09	%
Sma3	Metabolic pathways	01100		1.847e-09	%
Sma3	Biosynthesis of secondary metabolites	01110		1.847e-09	%
Sma3	Flavonoid 3',5'-hydroxylase.	EC:1.14.13.88	-	1.582e-11	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	1.582e-11	%
Sma3	Flavone and flavonol biosynthesis	00944	1.582e-11	%
Sma3	Biosynthesis of secondary metabolites	01110	1.582e-11	%

Source	Gene names
Sma3	AT4g31940; At1g13710; At1g74110; At1g74540; At1g74550; At2g40890; At2g46660; At3g61880; At4g31940; At5g09970; B1097H10.9; B1144B06.25; C3H; C3H1; C3H2; C3H3; CYP75A13; CYP78; CYP78A1; CYP78A11; CYP78A18; CYP78A2; CYP78A20; CYP78A21v1; CYP78A21v2; CYP78A22

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	microsome	GO:0005792	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	p-coumarate 3-hydroxylase activity	GO:0046409	Molecular Function	-
Sma3	coumarin biosynthetic process	GO:0009805	Biological Process	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Immunoglobulin-like	IPR007110	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G01190.1	CYP78A8 cytochrome P450, family 78, subfamily A, polypeptide 8 chr1:83045-84864 REVERSE LENGTH=535	62%
RefSeq	Arabidopsis thaliana	NP_191747.1	cytochrome p450 78a9 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002299298.1	cytochrome P450 [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADP0

Fln msg: your sequence is shorter than subject: 187 - 432

Fln protein: HEELDRVVGDSRRVSESDIPKLEYLQAVVKEVLRMHPPGPLLSWARLATHDVVVAGRHFVPAGTTAMVNMWAITHDHDIWNKPHTFCPGRFLVAAGGEEVNIMGMDLRLAPFGSGRRVCPGKALGLATIHLWLARLLHHFQWIPALPHQPVDLSEVLRLSCEMQVPLSAKVIPRSVNFNMSMANIH*

Protein Length: 188

Fln nts: TGCATGAAGAACTGGACCGTGTGGTGGGAGACTCGCGAAGAGTCTCAGAGTCTGACATTCCAAAGCTGGAGTACTTGCAGGCGGTGGTGAAGGAGGTTCTGAGGATGCACCCACCAGGGCCTCTTCTGTCGTGGGCTCGCCTCGCCACTCACGACGTTGTTGTAGCGGGACGGCACTTTGTTCCAGCAGGCACCACAGCGATGGTAAACATGTGGGCTATAACGCACGACCATGACATCTGGAACAAACCCCACACCTTCTGTCCCGGCAGATTTCTTGTCGCCGCAGGAGGTGAGGAAGTGAACATCATGGGAATGGATTTGAGGTTGGCGCCCTTTGGTTCCGGGAGGCGAGTATGCCCTGGAAAAGCTTTGGGACTTGCCACAATTCACCTCTGGCTCGCCCGTCTCCTTCACCACTTTCAATGGATCCCTGCATTGCCCCACCAACCAGTGGATCTCTCAGAGGTGTTGAGACTTTCATGTGAGATGCAAGTACCCTTATCCGCCAAGGTCATACCTAGATCAGTTAACTTCAATATGTCCATGGCCAATATCCATTAA___C

Fln Alignment:

Contig22130___HEELDRVVGDSRRVSESDIPKLEYLQAVVKEVLRMHPPGPLLSWARLATHDVVVAGRHFVPAGTTAMVNMWAITHDHDIWNKPHTFCPGRFLVAAGGEEVNIMGMDLRLAPFGSGRRVCPGKALGLATIHLWLARLLHHFQWIPALPHQPVDLSEVLRLSCEMQVPLSAKVIPRS
D5ADP0_______________HEELDSVVGNTRQLTESDIPKLHYLQAVVKEVLRIHPPGPLLSWARRSIHDVHVGG-HLIPAGTTAYVNMWSITHDEKIWEDPLSFKPDRFLPSAGGVDVNIMGSDLRLAPFGSGRRACPGKALGLQTVHTWLARMLHHFQWLPSQDH-PVDLTEVLRLSCEMKAPLYAKPIKRN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
191	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain